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The solution space of genome-scale models of cellular metabolism provides a map between physically viable flux configurations and cellular metabolic phenotypes described, at the most basic level, by the corresponding growth rates. By…

分子网络 · 定量生物学 2016-05-30 Daniele De Martino , Fabrizio Capuani , Andrea De Martino

Scaling in complex supply networks is a population-level optimization phenomenon thought to arise from the evolutions of the underlying individual networks, but the evolution-scaling connection has not been empirically demonstrated. Here,…

物理与社会 · 物理学 2020-04-30 Likwan Cheng , Bryan W. Karney

A brief review is presented of the scaling of complex fluids, polymers and polyelectrolytes in solution and in confined geometry, in thermodynamical, structural and rheology properties using equilibrium and nonequilibrium dissipative…

软凝聚态物质 · 物理学 2016-12-06 Armando Gama Goicochea

Branching can be observed at the austenite-martensite interface of martensitic phase transformations. For a model problem, Kohn and M\"uller studied a branching pattern with optimal scaling of the energy with respect to its parameters.…

数值分析 · 数学 2016-01-07 Patrick Dondl , Behrend Heeren , Martin Rumpf

We consider the problem of estimating the states of weakly coupled linear systems from sampled measurements. We assume that the total capacity available to the sensors to transmit their samples to a network manager in charge of the…

系统与控制 · 计算机科学 2016-10-25 Xudong Chen , M. -A. Belabbas , Tamer Basar

A number of problems in communication systems demand the distributed allocation of network resources in order to provide better services, sampling and distribution methods. The solution to these issues is becoming more challenging due to…

统计力学 · 物理学 2007-05-23 Pablo Echenique , Jesus Gomez-Gardenes , Yamir Moreno , Alexei Vazquez

We study scaling properties of stochastic aggregation processes in one dimension. Numerical simulations for both diffusive and ballistic transport show that the mass distribution is characterized by two independent nontrivial exponents…

统计力学 · 物理学 2007-05-23 E. Ben-Naim , P. L. Krapivsky

The survival and proliferation of cells and organisms require a highly coordinated allocation of cellular resources to ensure the efficient synthesis of cellular components. In particular, the total enzymatic capacity for cellular…

分子网络 · 定量生物学 2013-12-11 Stefan Müller , Georg Regensburger , Ralf Steuer

The continuous-space symbiotic branching model describes the evolution of two interacting populations that can reproduce locally only in the simultaneous presence of each other. If started with complementary Heaviside initial conditions,…

概率论 · 数学 2016-03-16 Jochen Blath , Matthias Hammer , Marcel Ortgiese

One of the classical questions in evolutionary biology is how evolutionary processes are coupled at the gene and species level. With this motivation, we compare the topological properties (mainly the depth scaling, as a characterization of…

种群与进化 · 定量生物学 2011-07-26 E. Alejandro Herrada , Víctor M. Eguíluz , Emilio Hernández-García , Carlos M. Duarte

We consider the logistic metapopulation model over a stream network and use the metapopulation growth rate and the total biomass (of the positive equilibrium) as metrics for different aspects of population persistence. Our objective is to…

Branching in vascular networks and in overall organismic form is one of the most common and ancient features of multicellular plants, fungi, and animals. By combining machine-learning techniques with new theory that relates vascular form to…

Spatial networks of land cover are well-described by power law rank-size distributions. Continuous field proxies for human settlements, agriculture and forest cover have similar spatial scaling properties spanning 4 to 5 orders of…

物理与社会 · 物理学 2015-12-07 Christopher Small , Daniel Sousa

We investigate flow dynamics in rivers characterized by basin areas and daily mean discharge spanning different orders of magnitude. We show that the delayed increments evaluated at time scales ranging from days to months can be opportunely…

适应与自组织系统 · 物理学 2015-05-20 M. De Domenico , V. Latora

A generic flow distribution network typically does not deliver its load at a uniform rate across a service area, instead oversupplying regions near the nutrient source while leaving downstream regions undersupplied. In this work we…

生物物理 · 物理学 2021-09-06 Tatyana Gavrilchenko , Eleni Katifori

While the deployment of base stations (BSs) becomes increasingly dense in order to accommodate the growth in traffic demand, these BSs may be under-utilized during most hours except peak hours. Accordingly, the deactivation of these…

信息论 · 计算机科学 2014-03-19 Taesoo Kwon

A common feature of biological networks is the geometric property of self-similarity. Molecular regulatory networks through to circulatory systems, nervous systems, social systems and ecological trophic networks, show self-similar…

分子网络 · 定量生物学 2012-03-09 Simon DeDeo , David C. Krakauer

The objective of this three-part work is to formulate and rigorously analyse a number of reduced mathematical models that are nevertheless capable of describing the hydrology at the scale of a river basin (i.e. catchment). Coupled surface…

流体动力学 · 物理学 2023-12-29 Piotr Morawiecki , Philippe H. Trinh

The effects of erosion, avalanching and random precipitation are captured in a simple stochastic partial differential equation for modelling the evolution of river networks. Our model leads to a self-organized structured landscape and to…

凝聚态物理 · 物理学 2009-10-28 Achille Giacometti , Amos Maritan , Jayanth R. Banavar

We analyze the structure of networks minimizing the global resistance to flow (or dissipated energy) with respect to two different constraints: fixed total channel volume and fixed total channel surface area. First, we determine the shape…

适应与自组织系统 · 物理学 2007-05-23 Marc Durand