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With the aim of establishing a criterion for identifying when a lipid bilayer has reached steady state using the molecular dynamics simulation technique, lipid bilayers of different composition in their liquid crystalline phase were…

软凝聚态物质 · 物理学 2012-12-13 Rodolfo D. Porasso , José J. López Cascales

Under appropriate conditions, mixtures of cationic and neutral lipids and DNA in water condense into complexes in which DNA strands form local 2D smectic lattices intercalated between lipid bilayer membranes in a lamellar stack. These…

软凝聚态物质 · 物理学 2009-10-31 L. Golubovic , T. C. Lubensky , C. S. O'Hern

We consider a model of bilayer lipid membrane with bola-lipids. The bola-lipid is modeled by linking tails of the hydrophobic chains in the opposite monolayers within bilayer as a first approximation. A number of thermodynamical…

生物大分子 · 定量生物学 2016-02-26 Sergei I. Mukhin , Boris B. Kheyfets

A mesoscopic coarse-grain model for computationally-efficient simulations of biomembranes is presented. It combines molecular dynamics simulations for the lipids, modeled as elastic chains of beads, with multiparticle collision dynamics for…

软凝聚态物质 · 物理学 2015-06-04 Mu-Jie Huang , Raymond Kapral , Alexander S. Mikhailov , Hsuan-Yi Chen

Many questions concerning the biophysical and physiological properties of skin are still open. Skin aging, permeability, dermal absorption, hydration and drug transdermal delivery, are few examples of processes with its underlying…

软凝聚态物质 · 物理学 2019-07-08 Erika T. Sato , Neila Machado , Daniele R. Araújo , Luciana C. Paulino , Herculano Martinho

The oxidation of human sebum, a lipid mixture covering our skin, generates a range of volatile and semi-volatile carbonyl compounds that contribute largely to indoor air pollution in crowded environments. Kinetic models have been developed…

软凝聚态物质 · 物理学 2025-02-20 Rinto Thomas , Praveen Ranganath Prabhakar , Douglas J. Tobias , Michael von Domaros

Experiments on supported lipid bilayers featuring liquid ordered/disordered domains have shown that the spatial arrangement of the lipid domains and their chemical composition are strongly affected by the curvature of the substrate.…

软凝聚态物质 · 物理学 2021-02-17 Melissa Rinaldin , Piermarco Fonda , Luca Giomi , Daniela J. Kraft

We present a minimal model for simulating dynamics of assorted lipid assemblies in a computationally efficient manner. Our model is particle-based and consists of coarse-grained beads put together on a modular platform to give generic…

化学物理 · 物理学 2019-10-15 John M. A. Grime , Jesper J. Madsen

We investigate a model of an asymmetric bilayer consisting of sphigomyelin, phosphatidylcholine, and cholesterol in the outer leaflet, and phosphatidyl\-ethanolamine, (PE), phosphatidylserine, and cholesterol in the inner leaflet.…

软凝聚态物质 · 物理学 2016-08-23 H. Giang , M. Schick

The structure of membrane-active peptides and their interaction with lipid bilayers can be studied in oriented lipid membranes deposited on solid substrates. Such systems are desirable for a number of surface-sensitive techniques. Here we…

软凝聚态物质 · 物理学 2015-04-10 Chenghao Li , Doru Constantin , Tim Salditt

Relatively short peptides, such as toxins and antimicrobial-peptides, are known to insert themselves into cell membranes. On the basis of simple bead-spring models for the membrane lipids, the peptide, and water, detailed processes of the…

软凝聚态物质 · 物理学 2007-05-23 Mitsuharu Okazaki , Tomoki Watanabe , Naohito Urakami , Takashi Yamamoto

Specular neutron reflectometry (SNR) was measured on a system of a floating bilayer consisting of 1,2-dipalmitoyl-d62-\textit{sn}-glycero-3-phosphocholine (d62-diC16:0PC) deposited over a 1,2-dibehenoyl-\textit{sn}-glycero-3-phosphocholine…

软凝聚态物质 · 物理学 2014-12-17 Michal Belička , Yuri Gerelli , Norbert Kučerka , Giovanna Fragneto

A minimalist simulation model for lipid bilayers is presented. Each lipid is represented by a flexible chain of beads in implicit solvent. The hydrophobic effect is mimicked through an intermolecular pair potential localized at the…

统计力学 · 物理学 2009-11-11 Grace Brannigan , Peter F. Philips , Frank L. H. Brown

We present a simple, and physically motivated, coarse-grained model of a lipid bilayer, suited for micron scale computer simulations. Each ~25 nm^2 patch of bilayer is represented by a spherical particle. Mimicking forces of hydrophobic…

软凝聚态物质 · 物理学 2015-05-13 Andrea Pasqua , Lutz Maibaum , George Oster , Daniel A. Fletcher , Phillip L. Geissler

Understanding the (de)mixing behavior of multicomponent lipid bilayers is an important step towards unraveling the nature of spatial composition heterogeneities in cellular membranes and their role in biological function. We use…

软凝聚态物质 · 物理学 2018-05-17 Shushan He , Lutz Maibaum

Cationic lipid membranes are known to form compact complexes with DNA and to be effective as gene delivery agents both in vitro and in vivo. Here we employ molecular dynamics simulations for a detailed atomistic study of lipid bilayers…

软凝聚态物质 · 物理学 2009-11-10 A. A. Gurtovenko , Michael Patra , Mikko Karttunen , Ilpo Vattulainen

Amphiphilic lipid bilayers modify the friction properties of the surfaces on top of which they are deposited. In particular, the measured sliding friction coefficient is significantly reduced compared with the native surface. We investigate…

生物物理 · 物理学 2021-12-01 Othmène Benazieb , Claire Loison , Fabrice Thalmann

A molecular model is proposed of a bilayer consisting of fully saturated DPPC and mono unsaturated DOPC. The model not only encompasses the constant density within the hydrophobic core of the bilayer, but also the tendency of chain segments…

生物物理 · 物理学 2009-11-10 R. Elliott , K. Katsov , M. Schick , I. Szleifer

Highly oriented solid-supported lipid membranes in stacks of controlled number $N \simeq 16$ (oligo-membranes) have been prepared by spin-coating using the uncharged lipid model system 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC). The…

软凝聚态物质 · 物理学 2015-04-10 Ulrike Mennicke , Doru Constantin , Tim Salditt

In spite of the great success that all-atom molecular dynamics simulations have seen in revealing the nature of the lipid bilayer, the interplay between a membrane's curvature and dynamics remains elusive. This is largely due to the…

软凝聚态物质 · 物理学 2022-07-26 Christopher Kang , Kazuumi Fujioka , Rui Sun