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We propose and analyze a model for the dynamics of the flow into and out of a nest for the arboreal turtle ant $\textit{Cephalotes goniodontus}$ during foraging to investigate a possible mechanism for the emergence of oscillations. In our…

种群与进化 · 定量生物学 2025-09-05 Alia Valentine , Deborah M. Gordon , Anastasia Bizyaeva

A wide range of organisms features molecular machines, circadian clocks, which generate endogenous oscillations with ~24 h periodicity and thereby synchronize biological processes to diurnal environmental fluctuations. Recently, it has…

分子网络 · 定量生物学 2016-02-03 Mathias Foo , David E. Somers , Pan-Jun Kim

We develop a latent variable model and an efficient spectral algorithm motivated by the recent emergence of very large data sets of chromatin marks from multiple human cell types. A natural model for chromatin data in one cell type is a…

机器学习 · 统计学 2015-06-09 Chicheng Zhang , Jimin Song , Kevin C Chen , Kamalika Chaudhuri

Sex chromosomes have evolved repeatedly across the Tree of Life, yet their evolutionary fates differ strikingly. In sharp contrast to mammals and birds with degenerated, stable Y/W chromosomes, in most amphibians, teleosts, non avian…

种群与进化 · 定量生物学 2026-03-24 Wen-Juan Ma , Ricard Fontserè , Tristan Cornelis , Paris Veltsos , Qi Zhou

The observation of non-perturbative harmonic emission in solids from ultrashort laser pulses [1] sparked a wave of studies [2,3] as a probe of charge carrier dynamics in solids under strong fields and a route to extreme ultraviolet (XUV)…

Microarray time course (MTC) gene expression data are commonly collected to study the dynamic nature of biological processes. One important problem is to identify genes that show different expression profiles over time and pathways that are…

应用统计 · 统计学 2008-12-18 Zhi Wei , Hongzhe Li

The "developmental hourglass" describes a pattern of increasing morphological divergence towards earlier and later embryonic development, separated by a period of significant conservation across distant species (the "phylotypic stage").…

生物物理 · 物理学 2017-01-31 Saamer Akhshabi , Shrutii Sarda , Constantine Dovrolis , Soojin Yi

The hairpin instability of a jet in a crossflow (JICF) for a low jet-to-crossflow velocity ratio is investigated experimentally for a velocity ratio range of $R\in(0.14,0.75)$ and crossflow Reynolds numbers $Re_D\in(260,640)$. From spectral…

流体动力学 · 物理学 2019-02-22 Lukasz Klotz , Konrad Gumowski , Jose Eduardo Wesfreid

Latent heat flux is a primary pathway for ocean-atmosphere exchange of heat and moisture, yet the influence of sea surface temperature variability at fine scales ($\leq$ 100 km) on latent heat flux variability, particularly over the…

大气与海洋物理 · 物理学 2026-02-18 Lucie Reymondet , Lia Siegelman , Luc Lenain

We investigate a model of the GnRH pulse and surge generator, with the definite aim of constraining the model GnRH output with respect to a physiologically relevant list of specifications. The alternating pulse and surge pattern of…

动力系统 · 数学 2009-12-14 Frédérique Clément , Alexandre Vidal

Molecular phylogenetic and phylogeographic reconstructions generally assume time-homogeneous substitution processes. Motivated by computational convenience, this assumption sacrifices biological realism and offers little opportunity to…

种群与进化 · 定量生物学 2013-09-13 Filip Bielejec , Philippe Lemey , Guy Baele , Andrew Rambaut , Marc A Suchard

Round-the-clock monitoring of human behavior and emotions is required in many healthcare applications which is very expensive but can be automated using machine learning (ML) and sensor technologies. Unfortunately, the lack of…

信号处理 · 电气工程与系统科学 2021-02-17 Bonny Banerjee , Masoumeh Heidari Kapourchali , Murchana Baruah , Mousumi Deb , Kenneth Sakauye , Mette Olufsen

Avian hair cells depend on electrical resonance for frequency selectivity. The upper bound of the frequency range is limited by the RC time constant of hair cells because the sharpness of tuning requires that the resonance frequency must be…

生物物理 · 物理学 2021-12-28 Kuni H. Iwasa

We investigate the perturbation dynamics in a supersonic shear layer using a combination of large-eddy simulations (LES) and linear-operator-based input-output analysis. The flow consists of two streams-a main stream (Mach 1.23) and a…

流体动力学 · 物理学 2024-07-26 Mitesh Thakor , Yiyang Sun , Datta V. Gaitonde

We have previously demonstrated that in the context of two-dimensional (2D) coherent electronic spectroscopy measured by phase modulation and phase-sensitive detection, an \emph{incoherent} nonlinear response, due to pairs of…

Temporal coherence of individual signal or idler beam, determined by the spectral correlation property of photon pairs, is important for realizing quantum interference among independent sources. To understand the effect of chirp on the…

量子物理 · 物理学 2015-05-28 Xiaoxin Ma , Xiaoying Li , Liang Cui , Xueshi Guo , Lei Yang

This study investigates the influence of shear-thinning on the instability of a prototype time-periodic flow, the Stokes layer, in Carreau fluids. The time-dependent base flow was solved using a numerical method and a binomial expansion…

流体动力学 · 物理学 2026-05-06 Mengqi Zhang , Dongdong Wan , Huanshu Tan

Circadian rhythms in mammals are controlled by the neurons located in the suprachiasmatic nucleus of the hypothalamus. In physiological conditions, the system of neurons is very efficiently entrained by the 24-hour light-dark cycle. Most of…

生物物理 · 物理学 2010-12-30 Niko Komin , Adrian C. Murza , Emilio Hernandez-Garcia , Raul Toral

1. Spatial memory plays a role in the way animals perceive their environments, resulting in memory-informed movement patterns that are observable to ecologists. Developing mathematical techniques to understand how animals use memory in…

定量方法 · 定量生物学 2022-02-17 Peter R. Thompson , Andrew E. Derocher , Mark A. Edwards , Mark A. Lewis

In this work we study mixed mode oscillations in a model of secretion of GnRH (Gonadotropin Releasing Hormone). The model is a phantom burster consisting of two feedforward coupled FitzHugh-Nagumo systems, with three time scales. The…

动力系统 · 数学 2012-11-26 Maciej Krupa , Alexandre Vidal , Mathieu Desroches , Frédérique Clément