相关论文: Icosadeltahedral geometry of fullerenes, viruses a…
Icosahedral virus capsids are composed of symmetrons, organized arrangements of capsomers. There are three types of symmetrons: disymmetrons, trisymmetrons, and pentasymmetrons, which have different shapes and are centered on the…
A formalism is developed which allows to determine the locations of all local symmetry axes of three-dimensional particles with overall icosahedral symmetry. It relies on the fact that the root system of the non-crystallographic Coxeter…
Recent studies reveal that certain viruses package a portion of their genome in a manner that mirrors the icosahedral symmetry of the protein container, or capsid. Graph theoretical constraints forbid exact realization of icosahedral…
Recent high resolution structures for viral capsids with 12, 32 and 72 subunits ($T1$, $T3$ and $T7$ viruses) have confirmed theoretical predictions of an icosadeltahedral structure with 12 subunits having five nearest neighbors (pentamers)…
Cubic polyhedra with icosahedral symmetry where all faces are pentagons or hexagons have been studied in chemistry and biology as well as mathematics. In chemistry one of these is buckminsterfullerene, a pure carbon cage with maximal…
This paper constructs a Riemann surface associated to the icosahedron and discusses the geodesics associated to a flat metric on this surface. Because of the icosahedral symmetry, this is a distinguished special case of the example treated…
We apply Landau theory of crystallization to explain and to classify the capsid structures of small viruses with spherical topology and icosahedral symmetry. We develop an explicit method which predicts the positions of centers of mass for…
Retaining the combinatorial Euclidean structure of a regular icosahedron, namely the 20 equiangular (planar) triangles, the 30 edges of length 1, and the 12 different vertices together with the incidence structure, we investigate variations…
Icosahedron and dodecahedron can be dissected into tetrahedral tiles projected from 3D-facets of the Delone polytopes representing the deep and shallow holes of the root lattice D_6. The six fundamental tiles of tetrahedra of edge lengths 1…
The Gauss-Bonnet theorem for a polyhedron (a union of finitely many compact convex polytopes) in $n$-dimensional Euclidean space expresses the Euler characteristic of the polyhedron as a sum of certain curvatures, which are different from…
3D-facets of the Delone cells representing the deep and shallow holes of the root lattice D6 which tile the six-dimensional Euclidean space in an alternating order are projected into three-dimensional space. They are classified into six…
Real physical systems with reflective and rotational symmetries such as viruses, fullerenes and quasicrystals have recently been modeled successfully in terms of three-dimensional (affine) Coxeter groups. Motivated by this progress, we…
The Caspar-Klug classification of viruses whose protein shell, called viral capsid, exhibits icosahedral symmetry, has recently been extended to incorporate viruses whose capsid proteins are exclusively organised in pentamers. The approach,…
In a seminal paper Caspar and Klug established a theory that provides a family of polyhedra as blueprints for the structural organisation of viral capsids. In particular, they encode the locations of the proteins in the shells that…
We analyze polyhedra composed of hexagons and triangles with three faces around each vertex, and their 3-regular planar graphs of edges and vertices, which we call "trihexes". Trihexes are analogous to fullerenes, which are 3-regular planar…
We investigate the subgroup structure of the hyperoctahedral group in six dimensions. In particular, we study the subgroups isomorphic to the icosahedral group. We classify the orthogonal crystallographic representations of the icosahedral…
We present a top-down approach to the study of the dynamics of icosahedral virus capsids, in which each protein is approximated by a point mass. Although this represents a rather crude coarse-graining, we argue that it highlights several…
In this paper we discuss reflection groups and root systems, in particular non-crystallographic ones, and a Clifford algebra framework for both these concepts. A review of historical as well as more recent work on viral capsid symmetries…
It is shown how the coherent states permit to find different geometrical objects as the geodesics, the conjugate locus, the cut locus, the Calabi's diastasis and its domain of definition, the Euler-Poincar\'e characteristic, the number of…
A simple cut-and-patch method is presented for the construction and classification for fullerenes belonging to the octahedral point groups, $O$ or $O_h$. In order to satisfy the symmetry requirement of the octahedral group, suitable numbers…