相关论文: A combinatorial framework for RNA tertiary interac…

In this paper we study properties of topological RNA structures, i.e.~RNA contact structures with cross-serial interactions that are filtered by their topological genus. RNA secondary structures within this framework are topological…

In this paper we study $k$-noncrossing, canonical RNA pseudoknot structures with minimum arc-length $\ge 4$. Let ${\sf T}_{k,\sigma}^{[4]} (n)$ denote the number of these structures. We derive exact enumeration results by computing the…

Long non-coding RNA, microRNA, and messenger RNA enable key regulations of various biological processes through a variety of diverse interaction mechanisms. Identifying the interactions and cross-talk between these heterogeneous RNA classes…

Understanding multi-photon interactions in non-equilibrium quantum systems is an outstanding challenge in quantum optics. In this work, we develop an analytical and diagrammatic framework to explore three-photon interactions in atomic…

A non-linear Penner type interaction is introduced and studied in the random matrix model of homo-RNA. The asymptotics in length of the partition function is discussed for small and large $N$ (size of matrix). The interaction doubles the…

We derive an asymptotic formula for the number of connected 3-uniform hypergraphs with vertex set $[N]$ and $M$ edges for $M=N/2+R$ as long as $R$ satisfies $R = o(N)$ and $R=\omega(N^{1/3}\ln^{2} N)$. This almost completely fills the gap…

We formulate criteria for identification of the nuclear tetrahedral and octahedral symmetries and illustrate for the first time their possible realization in a Rare Earth nucleus 152Sm. We use realistic nuclear mean-field theory…

We enumerate the number of RNA contact structures according to their genus, i.e. the topological character of their pseudoknots. By using a recently proposed matrix model formulation for the RNA folding problem, we obtain exact results for…

A hypergraph is simple if it has no loops and no repeated edges, and a hypergraph is linear if it is simple and each pair of edges intersects in at most one vertex. For $n\geq 3$, let $r= r(n)\geq 3$ be an integer and let $\boldsymbol{k} =…

Models for RNA secondary structures (the topology of folded RNA) without pseudo knots are disordered systems with a complex state-space below a critical temperature. Hence, a complex dynamical (glassy) behavior can be expected, when…

We enumerate rooted 2-connected and 3-connected surface maps with respect to vertices and edges. We also derive the bivariate version of the large face-width result for random 3-connected maps. These results are then used to derive…

We formulate the RNA folding problem as an $N\times N$ matrix field theory. This matrix formalism allows us to give a systematic classification of the terms in the partition function according to their topological character. The theory is…

Three-neutron resonances are investigated using realistic nucleon-nucleon interaction models. The resonance pole trajectories are explored by first adding an additional interaction to artificially bind the three-neutron system and then…

The work is a detailed study of rational singularities of multiplicity 3 (RTP-singularities, for short). We give a list of nonisolated hypersurface singularities of which normalisations are the RTP-singularities, and construct their minimal…

Integrative biomolecular modeling of RNA relies on structural refined collections and accurate experimental data that reflect binding and folding behavior. However, the prediction of such collections remains challenging due to the rugged…

In this paper we derive polynomial time algorithms that generate random $k$-noncrossing matchings and $k$-noncrossing RNA structures with uniform probability. Our approach employs the bijection between $k$-noncrossing matchings and…

We construct accurate models of three-nucleon (3N) interaction by fitting, in a hybrid phenomenological approach, the low-energy constants parametrizing the subleading 3N contact operators to the triton binding energy, n-d scattering…

The Computable Cross Norm (CCNR) was recently discussed in Ref.~\cite{Yin:2022toc} as a measure of multipartite entanglement in a condensed matter context. In this short note, we point out that it is closely related to the $(2,n)$-R\'enyi…

We study Ising spin models on finitely connected random interaction graphs which are drawn from an ensemble in which not only the degree distribution $p(k)$ can be chosen arbitrarily, but which allows for further fine-tuning of the topology…

In this paper we study the distribution of stacks in $k$-noncrossing, $\tau$-canonical RNA pseudoknot structures ($<k,\tau> $-structures). An RNA structure is called $k$-noncrossing if it has no more than $k-1$ mutually crossing arcs and…