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In order to clarify the relationship between the phonon spectra of nanoparticles and their melting temperature, we studied in detail the size-dependent low energy vibration modes. A minimum model with atoms on a lattice and harmonic…

介观与纳米尺度物理 · 物理学 2009-11-13 Kai Kang , Shaojing Qin , Chuilin Wang

DNA deformations play crucial roles in many biological processes and material applications. During DNA deformation, DNA structural parameters often exhibit non-trivial and counterintuitive couplings, such as the twist-stretch and…

生物物理 · 物理学 2021-10-08 Chen Zhang , Fujia Tian , Ying Lu , Bing Yuan , Zhi-Jie Tan , Xing-Hua Zhang , Liang Dai

The self-assembly of DNA-coated colloids into highly-ordered structures offers great promise for advanced optical materials. However, control of disorder, defects, melting, and crystal growth is hindered by the lack of a microscopic…

软凝聚态物质 · 物理学 2022-05-18 Fan Cui , Sophie Marbach , Jeana Aojie Zheng , Miranda Holmes-Cerfon , David J. Pine

We introduce and numerically study a model designed to mimic the bulk behavior of a system composed of single-stranded DNA dendrimers. Complementarity of the base sequences of different strands results in the formation of strong cooperative…

软凝聚态物质 · 物理学 2009-11-11 Francis W. Starr , Francesco Sciortino

As sections of a strand duplexed DNA denature when exposed to high temperature, the excess linking number is taken up by the undenatured portions of the molecule. The mechanical energy that arises because of the overwinding of the…

软凝聚态物质 · 物理学 2009-11-07 Joseph Rudnick , Robijn Bruinsma

Measuring local temperature with a spatial resolution on the order of a few nanometers has a wide range of applications from semiconductor industry over material to life sciences. When combined with precision temperature measurement it…

We present a detailed molecular-dynamics study of the melting, freezing, and coalescence of gold nanoclusters within the framework of the embedded-atom method. Concerning melting, we find the process to first affect the surface…

材料科学 · 物理学 2009-10-30 Laurent J. Lewis , Pablo Jensen , Jean-Louis Barrat

Despite the inherently quantum mechanical nature of hydrogen bonding, it is unclear how nuclear quantum effects (NQEs) alter the strengths of hydrogen bonds. With this in mind, we use ab initio path integral molecular dynamics to determine…

化学物理 · 物理学 2016-11-22 Wei Fang , Ji Chen , Mariana Rossi , Yexin Feng , Xin-Zheng Li , Angelos Michaelides

We report a study of DNA (150 bp fragments) conformations in very low added salt $<0.05$mM, across wide DNA concentration range $0.0015\leq c \leq 8$~mM (bp). We found an intermediate DNA conformation in the region $0.05 < c < 1$~mM, by…

Thermal denaturation of DNA is often studied with coarse-grained models in which native sequential base pairing is mimicked by the existence of attractive interactions only between monomers at the same position along strands (Poland and…

统计力学 · 物理学 2014-01-22 Jaya Maji , Somendra M. Bhattacharjee , Flavio Seno , Antonio Trovato

We show that the effect of size dependence of the melting temperature of nanocrystals may be used to govern anomalies of thermodynamic properties of nanocrystals in the premelting range. For example, if temperature of nanocrystals is near…

材料科学 · 物理学 2009-10-16 A. I. Karasevskii , V. V. Lubashenko

A mesoscopic model for heterogeneous DNA denaturation is developed in the framework of the path integral formalism. The base pair stretchings are treated as one-dimensional, time dependent paths contributing to the partition function. The…

软凝聚态物质 · 物理学 2011-07-12 Marco Zoli

We investigate the influence of a dissipative environment which effectively comprises the effects of counterions and hydration shells, on the transport properties of short \DNA wires. Their electronic structure is captured by a…

软凝聚态物质 · 物理学 2007-05-23 R. Gutierrez , S. Mandal , G. Cuniberti

We study the melting of a double stranded DNA in the presence of stretching forces, via 3D Monte-Carlo simulations, exactly solvable models and heuristic arguments. The resulting force-temperature phase diagram is dramatically different for…

软凝聚态物质 · 物理学 2008-07-22 D. Marenduzzo , A. Maritan , E. Orlandini , F. Seno , A. Trovato

We discuss the effects of external stress on the thermal denaturation of homogeneous DNA. Pulling double-stranded DNA at each end exerts a profound effect on the thermal denaturation, or melting, of a long segment of this molecule. We…

软凝聚态物质 · 物理学 2009-11-13 Joseph Rudnick , Tatiana Kuriabova

We present an unique way to detect basepair mismatches in DNA leading to different epigenetic disorder by the method of nanopore sequencing. Based on a tight-binding formulation of graphene nanopore based device, using Greens function…

介观与纳米尺度物理 · 物理学 2016-02-26 Sourav Kundu , S. N. Karmakar

The melting behavior of long, heterogeneous DNA chains is examined within the framework of the nonlinear lattice dynamics based Peyrard-Bishop-Dauxois (PBD) model. Data for the pBR322 plasmid and the complete T7 phage have been used to…

生物物理 · 物理学 2012-02-20 Nikos Theodorakopoulos

We investigated the influence of doping antiferromagnetic MnN in polycrystalline MnN/CoFe exchange bias systems, showing high exchange bias of up to 1800 Oe at room temperature. The thermal stability of those systems is limited by nitrogen…

材料科学 · 物理学 2021-12-08 Mareike Dunz , Björn Büker , Markus Meinert

We have measured temperature dependent (between 20 and 80 C) electrical conductivity and molecular structure (Raman spectroscopy) of DNA-lipid cast film. Our findings show that the conductivity is strongly influenced by premelting effects…

软凝聚态物质 · 物理学 2007-05-23 A. Yu. Kasumov , S. Nakamae , M. Cazayous , T. Kawasaki , Y. Okahata

Characteristic photoluminescence (PL) of nanodiamonds (ND) of very different origin (detonation, HPHT, extracted from meteorite) was studied in situ at high temperatures in the range 20-450C. Luminescence was excited using 473 nm laser and…