数据结构与算法

A fundamental algorithmic problem in computational biology is to find all subgraphs of a given type (superbubbles, snarls, and ultrabubbles) in a directed or bidirected input graph. These correspond to regions of genetic variation and are…

We develop the first theoretically-efficient algorithm for maintaining the maximal independent set (MIS) of a graph in the parallel batch-dynamic setting. In this setting, a graph is updated with batches of edge insertions/deletions, and…

We provide improved space-time tradeoffs for permutation problems over additively idempotent semi-rings. In particular, there is an algorithm for the Traveling Salesperson Problem that solves $N$-vertex instances using space $S$ and time…

We prove that computing a shortest monotone path to the optimum of a linear program over a simple polytope is NP-hard, thus resolving a 2022 open question of De Loera, Kafer, and Sanit\`a. As a consequence, finding a shortest sequence of…

Research in explorable uncertainty addresses combinatorial optimization problems where there is partial information about the values of numeric input parameters, and exact values of these parameters can be determined by performing costly…

We obtain the first near-linear time deterministic algorithm for negative-weight single-source shortest paths on integer-weighted graphs. Our main ingredient is a deterministic construction of a padded decomposition on directed graphs,…

The longest common substring problem consists in finding a longest string that appears as a (contiguous) substring of two input strings. We consider the dynamic variant of this problem, in which we are to maintain two dynamic strings $S$…

In this work we propose a single rounding algorithm for the fractional solutions of the standard LP relaxation for $k$-clustering. As a starting point, we obtain an iterative rounding $(\frac{3^p + 1}{2})$-Lagrangian Multiplier-Perserving…

The traveling salesman problem (TSP) is a cornerstone of combinatorial optimization and has deeply influenced the development of algorithmic techniques in both exact and approximate settings. Yet, improving on the decades-old bounds for…

In this paper, we study classes of Boolean functions that are testable with $O(\psi+1/\epsilon)$ queries, where $\psi$ depends on the parameters of the class (e.g., the number of terms, the number of relevant variables, etc.) but not on the…

We study and further develop powerful general-purpose schemes to maintain random assignments under adversarial dynamic changes. The goal is to maintain assignments that are (approximately) distributed similarly as a completely fresh…

Inversion of a directed graph $D$ with respect to a vertex subset $Y$ is the directed graph obtained from $D$ by reversing the direction of every arc whose endpoints both lie in $Y$. More generally, the inversion of $D$ with respect to a…

The Knapsack Problem (KP) and its generalization, the Bounded Knapsack Problem (BKP), are classical NP-hard problems with numerous practical applications, and despite being introduced over 25 years ago, the solvers COMBO and BOUKNAP remain…

Cutting and packing problems are fundamental in manufacturing and logistics, as they aim to minimize waste and improve efficiency. The Cutting Stock Problem (CSP) concerns material cutting, whereas the Bin Packing Problem (BPP) concerns…

We study adversarially robust algorithms for insertion-deletion (turnstile) streams, where future updates may depend on past algorithm outputs. While robust algorithms exist for insertion-only streams with only a polylogarithmic overhead in…

We present an $f$-fault tolerant distance oracle for an undirected weighted graph where each edge has an integral weight from $[1 \dots W]$. Given a set $F$ of $f$ edges, as well as a source node $s$ and a destination node $t$, our oracle…

Computing the rotation distance between two binary trees with $n$ internal nodes efficiently (in $poly(n)$ time) is a long standing open question in the study of height balancing in tree data structures. In this paper, we initiate the study…

In the Fully Leafed Induced Subtrees, one is given a graph $G$ and two integers $a$ and $b$ and the question is to find an induced subtree of $G$ with $a$ vertices and at least $b$ leaves. This problem is known to be NP-complete even when…

The study of strings is an important combinatorial field that precedes the digital computer. Strings can be very long, trillions of letters, so it is important to find compact representations. Here we first survey various forms of one…

We study a natural generalization of the classical \textsc{Dominating Set} problem, called \textsc{Dominating Set with Quotas} (DSQ). In this problem, we are given a graph \( G \), an integer \( k \), and for each vertex \( v \in V(G) \), a…