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The study on the collective dynamics of synchronization among genetic oscillators is essential for the understanding of the rhythmic phenomena of living organisms at both molecular and cellular levels. Genetic oscillators are biochemical…

混沌动力学 · 物理学 2007-05-23 Chunguang Li , Luonan Chen , Kazuyuki Aihara

For a class of coupled limit cycle oscillators, we give a condition on a linear coupling operator that is necessary and sufficient for exponential stability of the synchronous solution. We show that with certain modifications our method of…

适应与自组织系统 · 物理学 2010-02-24 Georgi S. Medvedev

Oscillators coupled in a network can synchronize with each other to yield a coherent population rhythm. If multiple such networks are coupled together, the question arises whether these rhythms will synchronize. We investigate the impact of…

适应与自组织系统 · 物理学 2016-12-22 John Hongyu Meng , Hermann Riecke

The structure of a genetic network is uncovered by studying its response to external stimuli (input signals). We present a theory of propagation of an input signal through a linear stochastic genetic network. It is found that there are…

分子网络 · 定量生物学 2009-11-11 Ovidiu Lipan , Wing H. Wong

Networks of coupled dynamical systems provide a powerful way to model systems with enormously complex dynamics, such as the human brain. Control of synchronization in such networked systems has far reaching applications in many domains,…

适应与自组织系统 · 物理学 2018-03-21 Julien Gout , Markus Quade , Kamran Shafi , Robert K. Niven , Markus Abel

We examine microscopic mechanisms for coupling stochastic oscillators so that they display similar and correlated temporal variations. Unlike oscillatory motion in deterministic dynamical systems, complete synchronization of stochastic…

定量方法 · 定量生物学 2009-09-29 Amitabha Nandi , G. Santhosh , R. K. Brojen Singh , Ram Ramaswamy

We show that noise-induced oscillations in a gene circuit model display stochastic coherence, that is, a maximum in the regularity of the oscillations as a function of noise amplitude. The effect is manifest as a system-size effect in a…

分子网络 · 定量生物学 2009-08-05 Robert C. Hilborn , Jessie D. Erwin

Synchronization phenomena are pervasive in biology. In neuronal networks, the mechanisms of synchronization have been extensively studied from both physiological and computational viewpoints. The functional role of synchronization has also…

神经元与认知 · 定量生物学 2009-06-18 Nicolas Tabareau , Jean-Jacques Slotine , Quang-Cuong Pham

The emergence of synchronization in a network of coupled oscillators is a pervasive topic in various scientific disciplines ranging from biology, physics, and chemistry to social networks and engineering applications. A coupled oscillator…

最优化与控制 · 数学 2012-09-07 Florian Dörfler , Francesco Bullo

Synchronization is ubiquitous in nature, which is mathematically described by coupled oscillators. Synchronization strongly depends on the interaction network, and the network plays a crucial role in controlling the dynamics. To understand…

适应与自组织系统 · 物理学 2025-08-19 Akari Matsuki , Hiroshi Kori , Ryota Kobayashi

Synchronization is one of the paradigmatic phenomena in the study of complex systems. It has been explored theoretically and experimentally mostly to understand natural phenomena, but also in view of technological applications. Although…

The onset of synchronization in networks of networks is investigated. Specifically, we consider networks of interacting phase oscillators in which the set of oscillators is composed of several distinct populations. The oscillators in a…

动力系统 · 数学 2009-11-13 Ernest Barreto , Brian Hunt , Edward Ott , Paul So

From the flashes of fireflies to Josephson junctions and power infrastructure, networks of coupled phase oscillators provide a powerful framework to describe synchronization phenomena in many natural and engineered systems. Most real-world…

适应与自组织系统 · 物理学 2022-03-02 Sherwood Martineau , Tim Saffold , Timothy T. Chang , Henrik Ronellenfitsch

We study the synchronization behavior of a noisy network in which each system is driven by two sources of state-dependent noise: (1) an intrinsic noise which is common among all systems and can be generated by the environment or any…

动力系统 · 数学 2021-03-09 Zahra Aminzare , Vaibhav Srivastava

We study two important roles of miRNA as stress inducer and synchronizing agent in regulating diffusively coupled genetic oscillators within stochastic formalism and competition between them. We identify optimal value of coupling constant…

分子网络 · 定量生物学 2014-09-09 Saurabh Kumar Sharma , Shakti Nath Singh , Md. Jahoor Alam , R. K. Brojen Singh

Synthetic biology sets out to implement new functions in cells, and to develop a deeper understanding of biological design principles. In 2000, Elowitz and Leibler showed that by rational design of the reaction network, and using existing…

生物物理 · 物理学 2017-05-17 Joris Paijmans , David K Lubensky , Pieter Rein ten Wolde

Oscillatory gene circuits are ubiquitous to biology and are involved in fundamental processes of cell cycle, circadian rhythms and developmental systems. The synthesis of small, non-natural oscillatory genetic circuits have been…

分子网络 · 定量生物学 2020-02-05 Yash Joshi , Yash Kiran Jawale , Chaitanya Anil Athale

Synchronization is a widespread phenomenon observed in physical, biological, and social networks, which persists even under the influence of strong noise. Previous research on oscillators subject to common noise has shown that noise can…

适应与自组织系统 · 物理学 2021-06-02 Zachary G. Nicolaou , Michael Sebek , Istvan Z. Kiss , Adilson E. Motter

We study the response of an ensemble of synchronized phase oscillators to an external harmonic perturbation applied to one of the oscillators. Our main goal is to relate the propagation of the perturbation signal to the structure of the…

统计力学 · 物理学 2009-11-10 D. H. Zanette

Many networks must maintain synchrony despite the fact that they operate in noisy environments. Important examples are stochastic inertial oscillators, which are known to exhibit fluctuations with broad tails in many applications, including…

适应与自组织系统 · 物理学 2019-12-03 Jason Hindes , Philippe Jacquod , Ira B. Schwartz
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