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The structure of ecological interactions is commonly understood through analyses of interaction networks. However, these analyses may be sensitive to sampling biases in both the interactors (the nodes of the network) and interactions (the…

Functional networks provide a topological description of activity patterns in the brain, as they stem from the propagation of neural activity on the underlying anatomical or structural network of synaptic connections. This latter is well…

无序系统与神经网络 · 物理学 2021-02-11 Ali Safari , Paolo Moretti , Ibai Diez , Jesus M. Cortes , Miguel Ángel Muñoz

The exploration of the structural topology and the organizing principles of genome-based large-scale metabolic networks is essential for studying possible relations between structure and functionality of metabolic networks. Topological…

分子网络 · 定量生物学 2007-05-23 Jing Zhao , Hong Yu , Jian-Hua Luo , Zhi-Wei Cao , Yi-Xue Li

In this paper, we propose an evolving network model growing fast in units of module, based on the analysis of the evolution characteristics in real complex networks. Each module is a small-world network containing several interconnected…

物理与社会 · 物理学 2011-10-11 Zou Zhi-Yun , Liu Peng , Lei Li , Gao Jian-Zhi

Understanding the dependence and interplay between architecture and function in biological networks has great relevance to disease progression, biological fabrication and biological systems in general. We propose methods to assess the…

定量方法 · 定量生物学 2009-10-17 Soumen Roy , Vladimir Filkov

Food webs, networks of feeding relationships among organisms, provide fundamental insights into mechanisms that determine ecosystem stability and persistence. Despite long-standing interest in the compartmental structure of food webs, past…

种群与进化 · 定量生物学 2013-06-18 Edward B. Baskerville , Andy P. Dobson , Trevor Bedford , Stefano Allesina , Mercedes Pascual

In a cell or microorganism the processes that generate mass, energy, information transfer, and cell fate specification are seamlessly integrated through a complex network of various cellular constituents and reactions. However, despite the…

统计力学 · 物理学 2009-10-31 H. Jeong , B. Tombor , R. Albert , Z. N. Oltvai , A. -L. Barabasi

Food webs -- networks of predators and prey -- have long been known to exhibit "intervality": species can generally be ordered along a single axis in such a way that the prey of any given predator tend to lie on unbroken compact intervals.…

种群与进化 · 定量生物学 2016-06-29 Virginia Domínguez-García , Samuel Johnson , Miguel A. Muñoz

Networks have in recent years emerged as an invaluable tool for describing and quantifying complex systems in many branches of science. Recent studies suggest that networks often exhibit hierarchical organization, where vertices divide into…

机器学习 · 统计学 2008-11-05 Aaron Clauset , Cristopher Moore , M. E. J. Newman

The architecture of biological networks has been reported to exhibit high level of modularity, and to some extent, topological modules of networks overlap with known functional modules. However, how the modular topology of the molecular…

分子网络 · 定量生物学 2007-09-07 Jing Zhao , Guo-Hui Ding , Lin Tao , Hong Yu , Zhong-Hao Yu , Jian-Hua Luo , Zhi-Wei Cao , Yi-Xue Li

Complex network theory aims to model and analyze complex systems that consist of multiple and interdependent components. Among all studies on complex networks, topological structure analysis is of the most fundamental importance, as it…

社会与信息网络 · 计算机科学 2010-09-15 Bo Yang , Jiming Liu

The influence of the network's structure on the dynamics of spreading processes has been extensively studied in the last decade. Important results that partially answer this question show a weak connection between the macroscopic behavior…

物理与社会 · 物理学 2012-03-12 Daniel Smilkov , Ljupco Kocarev

The robustness of connectivity and the efficiency of paths are incompatible in many real networks. We propose a self-organization mechanism for incrementally generating onion-like networks with positive degree-degree correlations whose…

物理与社会 · 物理学 2016-05-09 Yukio Hayashi

Biological networks have evolved to be highly functional within uncertain environments while remaining extremely adaptable. One of the main contributors to the robustness and evolvability of biological networks is believed to be their…

分子网络 · 定量生物学 2008-02-14 Arend Hintze , Christoph Adami

We study diffusion-driven pattern-formation in networks of networks, a class of multilayer systems, where different layers have the same topology, but different internal dynamics. Agents are assumed to disperse within a layer by undergoing…

物理与社会 · 物理学 2018-03-28 Andreas Brechtel , Philipp Gramlich , Daniel Ritterskamp , Barbara Drossel , Thilo Gross

Networks are widely used in the biological, physical, and social sciences as a concise mathematical representation of the topology of systems of interacting components. Understanding the structure of these networks is one of the outstanding…

数据分析、统计与概率 · 物理学 2007-06-21 M. E. J. Newman , E. A. Leicht

Community structure is one of the key properties of complex networks and plays a crucial role in their topology and function. While an impressive amount of work has been done on the issue of community detection, very little attention has…

物理与社会 · 物理学 2010-09-17 Andrea Lancichinetti , Mikko Kivela , Jari Saramaki , Santo Fortunato

In complex networks there are overlapping substructures or "circles" that consist of nodes belonging to multiple cohesive subgroups. Yet the role of these overlapping nodes in influence spreading processes remains underexplored. In the…

社会与信息网络 · 计算机科学 2026-03-12 Kosti Koistinen , Vesa Kuikka , Kimmo Kaski

The city is a complex system that evolves through its inherent social and economic interactions. Mediating the movements of people and resources, urban street networks offer a spatial footprint of these activities; consequently their…

物理与社会 · 物理学 2018-04-19 Minjin Lee , Hugo Barbosa , Hyejin Youn , Petter Holme , Gourab Ghoshal

In the field of urban planning, road network system planning is often the first step and the main purpose of urban planning is to create a spatial configuration of different functions such as residence, education, business, etc. Generally…

物理与社会 · 物理学 2022-11-04 Huidan Xiao , Tao Yang