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Pathogen-mediated competition, through which an invasive species carrying and transmitting a pathogen can be a superior competitor to a more vulnerable resident species, is one of the principle driving forces influencing biodiversity in…

种群与进化 · 定量生物学 2009-11-13 Jaewook Joo , Eric Harvill , Reka Albert

Bacteria and their viruses ("bacteriophages") coexist in natural environments forming complex infection networks. Recent empirical findings suggest that phage-bacteria infection networks often possess a nested structure such that there is a…

种群与进化 · 定量生物学 2013-04-09 Luis F. Jover , Michael H. Cortez , Joshua S. Weitz

Phage therapy is an alternative treatment method for bacterial infections. It has shown particular promise in reducing bacterial load while preventing antibiotic resistance. Here, we develop a mathematical model of a bacterial infection…

种群与进化 · 定量生物学 2025-12-23 Rohan Shirur , Bryce Morsky

Bacteria and their bacteriophages are the most abundant, widespread and diverse groups of biological entities on the planet. In an attempt to understand how the interactions between bacteria, virulent phages and temperate phages might…

种群与进化 · 定量生物学 2009-11-13 Martin Rosvall , Ian B. Dodd , Sandeep Krishna , Kim Sneppen

As antibiotic resistance grows more frequent for common bacterial infections, alternative treatment strategies such as phage therapy have become more widely studied in the medical field. While many studies have explored the efficacy of…

种群与进化 · 定量生物学 2021-04-20 Kylie J Landa , Lauren M Mossman , Rachel J Whitaker , Zoi Rapti , Sara M Clifton

Bacteriophages are viruses infecting bacteria and archaea. Many phage species cause infections which lead to the certain death of the infected prokaryotic host cell and the release of a large batch of phage progeny, yet they have been able…

种群与进化 · 定量生物学 2019-12-24 Matthias M. Fischer

Bacteria regulate their motility through a variety of mechanisms, including quorum sensing (QS) and other density-dependent responses mediated by diffusible signals. While nonlinear density-dependent motility is well known in active-matter…

种群与进化 · 定量生物学 2026-01-21 Mattia Mattei , David Soriano-Paños , Alex Arenas

Resource-based competition between microorganisms species in continuous culture has been studied extensively both experimentally and theoretically, mostly for bacteria through Monod and and Contois "constant yield" models, or for…

最优化与控制 · 数学 2012-08-09 Pierre Masci , Frédéric Grognard , Eric Benoît , Olivier Bernard

Bacteriophages are central to microbial ecosystems for balancing bacterial populations and promoting evolution by applying strong selection pressure. Here we review some of the known aspects that modulate phage-bacteria interaction in a way…

种群与进化 · 定量生物学 2023-04-12 Namiko Mitarai , Anastasios Marantos , Kim Sneppen

We present a mathematical model based on a system of partial differential equations (PDEs) with cross-diffusion and reaction terms to describe ecological interactions between multiple bacterial species and substrates within microaggregates,…

种群与进化 · 定量生物学 2025-12-16 Viktoria Freingruber , Rebeca Gonzalez-Cabaleiro , Havva Yoldaş

Classical models for competition between two species usually predict exclusion or divergent evolution of resource exploitation. However, recent experimental data show that coexistence is possible for very similar species competing for the…

种群与进化 · 定量生物学 2009-11-13 I. C. Charret , J. N. C. Louzada , A. T. Costa

Many bacterial species produce toxins that inhibit their competitors. We model this phenomenon by extending classic two-species Lotka-Volterra competition in one spatial dimension to incorporate toxin production by one species. Considering…

种群与进化 · 定量生物学 2019-09-23 Andrew D. Dean , Malcolm J. Horsburgh , Bakhti Vasiev

The far-reaching consequences of ecological interactions in the dynamics of biological communities remain an intriguing subject. For decades, competition has been a cornerstone in ecological processes, but mounting evidence shows that…

种群与进化 · 定量生物学 2021-07-19 F. Meloni , G. Nakamura , B. Grammaticos , A. S. Martinez , M. Badoual

Bacteriophage-bacteria interactions are central to microbial ecology, influencing evolution, biogeochemical cycles, and pathogen behavior. Most theoretical models assume static environments and passive bacterial hosts, neglecting the joint…

生物物理 · 物理学 2025-12-10 Hao-Neng Luo , Zhi-Xi Wu , Jian-Yue Guan

In ecological systems heterogeneous interactions between pathogens take place simultaneously. This occurs, for instance, when two pathogens cooperate, while at the same time multiple strains of these pathogens co-circulate and compete.…

种群与进化 · 定量生物学 2025-05-05 Francesco Pinotti , Fakhteh Ghanbarnejad , Philipp Hövel , Chiara Poletto

In this paper we consider a competition system in which two diseases spread by contact. We characterize the system behavior, establishing that only some configurations are possible. In particular we discover that coexistence of the two…

动力系统 · 数学 2014-04-06 Roberto Cavoretto , Simona Collino , Bianca Giardino , Ezio Venturino

Patterned vegetation is a characteristic feature of many dryland ecosystems. While plant densities on the ecosystem-wide scale are typically low, a spatial self-organisation principle leads to the occurrence of alternating patches of high…

种群与进化 · 定量生物学 2020-05-05 Lukas Eigentler

As antibiotic resistance continues to pose a significant threat to public health, alternative treatments are urgently needed. Phage therapy, which utilizes bacteriophages to specifically target bacterial pathogens, has emerged as a…

种群与进化 · 定量生物学 2025-02-27 Blessing Emerenini , Edward Beck , Kathryn Cantrel , Vedat Kurtay

This study investigates the role of spatial segregation, prompted by competition avoidance, as a key mechanism for emergent coexistence within microbial communities. Recognizing these communities as complex adaptive systems, we challenge…

物理与社会 · 物理学 2024-03-12 Mattia Mattei , Alex Arenas

In this work we develop a discrete model of competing species affected by a common parasite. We analyze the influence of the fast development of the shared disease on the community dynamics. The model is presented under the form of a two…

动力系统 · 数学 2024-02-07 Rafael Bravo de La Parra , Luis Sanz
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