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The recently discovered Acanthamoeba polyphaga Mimivirus is the largest known DNA virus. Its particle size (>400 nm), genome length (1.2 million bp) and large gene repertoire (911 protein coding genes) blur the established boundaries…

The discovery and genome analysis of Acanthamoeba polyphaga Mimivirus, the largest known DNA virus, challenged much of the accepted dogma regarding viruses. Its particle size (>400 nm), genome length (1.2 million bp) and huge gene…

种群与进化 · 定量生物学 2007-05-23 Elodie Ghedin , Jean-Michel Claverie

The initial analysis of the recently sequenced genome of Acanthamoeba polyphaga Mimivirus, the largest known double-stranded DNA virus, predicted a proteome of size and complexity more akin to small parasitic bacteria than to other…

基因组学 · 定量生物学 2016-08-16 Karsten Suhre , Stéphane Audic , Jean-Michel Claverie

Gene duplication is key to molecular evolution in all three domains of life and may be the first step in the emergence of new gene function. It is a well recognized feature in large DNA viruses, but has not been studied extensively in the…

基因组学 · 定量生物学 2007-05-23 Karsten Suhre

Giant viruses contain large genomes, encode many proteins atypical for viruses, replicate in large viral factories, and tend to infect protists. The giant virus replication factories can in turn be infected by so called virophages, which…

种群与进化 · 定量生物学 2013-01-28 Dominik Wodarz

The first giant virus was identified in 2003 from a biofilm of an industrial water-cooling tower in England. Later, numerous new giant viruses were found in oceans and freshwater habitats, some of them having even 2,500 genes. We have…

基因组学 · 定量生物学 2015-11-26 Csaba Kerepesi , Vince Grolmusz

Reputed intractable, the question of the origin of viruses has long been neglected. In the modern literature 'Virus evolution' has come to refer to study more akin to population genetics, such as the world-wide scrutiny on new polymorphisms…

种群与进化 · 定量生物学 2007-05-23 Jean-Michel Claverie

Salamanders (urodela) have among the largest vertebrate genomes, ranging in size from 10 to over 80 pg. The urodela are divided into ten extant families each with a characteristic range in genome size. Although changes in genome size often…

基因组学 · 定量生物学 2015-03-10 Bianca Sclavi , John Herrick

Motivation: Nucleocytoplasmic large DNA viruses (NCLDVs) are notable for their large genomes and extensive gene repertoires, which contribute to their widespread environmental presence and critical roles in processes such as host metabolic…

基因组学 · 定量生物学 2025-01-28 Fuchuan Qu , Cheng Peng , Jiaojiao Guan , Donglin Wang , Yanni Sun , Jiayu Shang

Darwin introduced the concept of the "living fossil" to describe species belonging to lineages that have experienced little evolutionary change, and suggested that species in more slowly evolving lineages are more prone to extinction (1).…

基因组学 · 定量生物学 2013-02-12 Bianca Sclavi , John Herrick

The terminase motors of bacteriophages have been shown to be among the strongest active machines in the biomolecular world, being able to package several tens of kilobase pairs of viral genome into a capsid within minutes. Yet these motors…

Bacteriophages, phages for short, are viruses of bacteria. The majority of phages contain a double-stranded DNA genome packaged in a capsid at a density of ~500 mg/ml. This high density requires substantial compression of the normal B form…

生物大分子 · 定量生物学 2010-12-13 Debabrata Panja , Ian J. Molineux

Multipartite viruses replicate through a puzzling evolutionary strategy. Their genome is segmented into two or more parts, and encapsidated in separate particles that appear to propagate independently. Completing the replication cycle,…

物理与社会 · 物理学 2019-03-26 Eugenio Valdano , Susanna Manrubia , Sergio Gómez , Alex Arenas

Very low levels of genetic diversity have been reported in vertebrates with large genomes, notably salamanders and lungfish [1-3]. Interpreting differences in heterozygosity, which reflects genetic diversity in a population, is complicated…

基因组学 · 定量生物学 2013-09-05 John Herrick , Bianca Sclavi

Statistical fluctuations in population sizes of microbes may be quite large depending on the nature of their underlying stochastic dynamics. For example, the variance of the population size of a microbe undergoing a pure birth process with…

种群与进化 · 定量生物学 2012-06-27 Dipjyoti Das , Dibyendu Das , Ashok Prasad

Although an exchange of genetic information by recombination plays an important role in the evolution of viruses, it is not clear how it generates diversity. {\it Geminiviruses} are plant viruses which have ambisense single-stranded…

种群与进化 · 定量生物学 2010-09-14 Kai Xu , Ruriko Yoshida

As organisms are faced with intense rapidly changing selective pressures, new genetic material is required to facilitate adaptation. Among sources of genetic novelty, gene duplications and transposable elements (TEs) offer new genes or new…

We investigated global patterns of variation in 157 whole genome sequences of Vibrio parahaemolyticus, a free-living and seafood associated marine bacterium. Pandemic clones, responsible for recent outbreaks of gastroenteritis in humans…

Malwares are big threat to digital world and evolving with high complexity. It can penetrate networks, steal confidential information from computers, bring down servers and can cripple infrastructures etc. To combat the threat/attacks from…

密码学与安全 · 计算机科学 2015-12-03 Ashu Sharma , S. K. Sahay

Freshwater Unionid bivalves have recently faced ecological upheaval through pollution, barriers to dispersal, human harvesting, and changes in fish-host prevalence. Currently, over 70% of species are threatened, endangered or extinct. To…

种群与进化 · 定量生物学 2022-11-18 Rebekah L. Rogers , Stephanie L. Grizzard , Jeffrey T. Garner
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