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The Thermodynamic Formalism provides a rigorous mathematical framework to study quantitative and qualitative aspects of dynamical systems. At its core there is a variational principle corresponding, in its simplest form, to the Maximum…

神经元与认知 · 定量生物学 2020-12-30 Rodrigo Cofré , Cesar Maldonado , Bruno Cessac

The cellular Potts model (CPM) is a powerful computational method for simulating collective spatiotemporal dynamics of biological cells. To drive the dynamics, CPMs rely on physics-inspired Hamiltonians. However, as first principles remain…

机器学习 · 计算机科学 2025-02-05 Koen Minartz , Tim d'Hondt , Leon Hillmann , Jörn Starruß , Lutz Brusch , Vlado Menkovski

Neural population activity often exhibits rich variability and temporal structure. This variability is thought to arise from single-neuron stochasticity, neural dynamics on short time-scales, as well as from modulations of neural firing…

机器学习 · 统计学 2014-10-14 Mijung Park , Jakob H. Macke

The neural mechanism of memory has a very close relation with the problem of representation in artificial intelligence. In this paper a computational model was proposed to simulate the network of neurons in brain and how they process…

神经元与认知 · 定量生物学 2020-12-02 Hui Wei

The traditional view of neural computation in the cerebral cortex holds that sensory neurons are specialized, i.e., selective for certain dimensions of sensory stimuli. This view was challenged by evidence of contextual interactions between…

神经元与认知 · 定量生物学 2022-04-26 Sergei Gepshtein , Ambarish Pawar , Sunwoo Kwon , Sergey Savel'ev , Thomas D. Albright

To fully understand, analyze, and determine the behavior of dynamical systems, it is crucial to identify their intrinsic modal coordinates. In nonlinear dynamical systems, this task is challenging as the modal transformation based on the…

机器学习 · 计算机科学 2025-03-13 Abdolvahhab Rostamijavanani , Shanwu Li , Yongchao Yang

Representation of brain network interactions is fundamental to the translation of neural structure to brain function. As such, methodologies for mapping neural interactions into structural models, i.e., inference of functional connectome…

神经元与认知 · 定量生物学 2022-03-18 Rahul Biswas , Eli Shlizerman

Thanks to novel, powerful brain activity recording techniques, we can create data-driven models from thousands of recording channels and large portions of the cortex, which can improve our understanding of brain-states neuromodulation and…

Metastable brain dynamics are characterized by abrupt, jump-like modulations so that the neural activity in single trials appears to unfold as a sequence of discrete, quasi-stationary states. Evidence that cortical neural activity unfolds…

神经元与认知 · 定量生物学 2019-06-20 Giancarlo La Camera , Alfredo Fontanini , Luca Mazzucato

Experimental manipulations perturb the neuronal activity. This phenomenon is manifested in the fMRI response. Dynamic causal model and its variants can model these neuronal responses along with the BOLD responses [1, 2, 3, 4, 5] .…

神经元与认知 · 定量生物学 2021-01-15 Sayan Nag

We present a fiber-distributed model of the reinforcing collagen of the human cornea. The model describes the basic connections between the components of the tissue by defining an elementary block (cell) and upscaling it to the physical…

生物物理 · 物理学 2023-06-28 Maria Laura De Bellis , Marcello Vasta , Alessio Gizzi , Anna Pandolfi

Human brain functional connectivity (FC) is often measured as the similarity of functional MRI responses across brain regions when a brain is either resting or performing a task. This paper aims to statistically analyze the dynamic nature…

计算机视觉与模式识别 · 计算机科学 2024-10-30 Mengyu Dai , Zhengwu Zhang , Anuj Srivastava

Robust characterization of dynamic causal interactions in multivariate biomedical signals is essential for advancing computational and algorithmic methods in biomedical imaging. Conventional approaches, such as Dynamic Bayesian Networks…

信号处理 · 电气工程与系统科学 2026-02-17 Farwa Abbas , Wei Dai , Zoran Cvetkovic , Verity McClelland

In this paper, we present a novel general framework grounded in the factor graph theory to solve kinematic and dynamic problems for multi-body systems. Although the motion of multi-body systems is considered to be a well-studied problem and…

机器人学 · 计算机科学 2021-07-27 José-Luis Blanco-Claraco , Antonio Leanza , Giulio Reina

We introduce a foundational model for brain dynamics that utilizes stochastic optimal control (SOC) and amortized inference. Our method features a continuous-discrete state space model (SSM) that can robustly handle the intricate and noisy…

机器学习 · 计算机科学 2025-02-10 Joonhyeong Park , Byoungwoo Park , Chang-Bae Bang , Jungwon Choi , Hyungjin Chung , Byung-Hoon Kim , Juho Lee

We propose a data-driven approach to represent neuronal network dynamics as a Probabilistic Graphical Model (PGM). Our approach learns the PGM structure by employing dimension reduction to network response dynamics evoked by stimuli applied…

神经元与认知 · 定量生物学 2017-11-02 Hexuan Liu , Jimin Kim , Eli Shlizerman

Simplified models are a necessary steppingstone for understanding collective neural network dynamics, in particular the transitions between different kinds of behavior, whose universality can be captured by such models, without prejudice.…

混沌动力学 · 物理学 2022-10-25 Rashid V. Williams-García , Stam Nicolis

Representing dynamical systems through data-driven universal spaces has proven effective; however, achieving this universality for human brain activity remains a significant challenge, further aggravated by diverse cognitive states and…

定量方法 · 定量生物学 2026-05-06 Ronghua Zheng , Chengyuan Qian , Weiyang Ding

Feed-forward neural networks consist of a sequence of layers, in which each layer performs some processing on the information from the previous layer. A downside to this approach is that each layer (or module, as multiple modules can…

机器学习 · 计算机科学 2020-10-19 Alex Lamb , Anirudh Goyal , Agnieszka Słowik , Michael Mozer , Philippe Beaudoin , Yoshua Bengio

In this paper we provide a comprehensive analysis of a structural model for the dynamics of prices of assets traded in a market originally proposed in [1]. The model takes the form of an interacting generalization of the geometric Brownian…

统计金融 · 定量金融 2018-06-06 Kartik Anand , Jonathan Khedair , Reimer Kuehn
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