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相关论文: Driven Polymer Translocation Through a Narrow Pore

200 篇论文

The paper shows how the diffusive movement of ions through a channel protein can be described as a chemical reaction over an arbitrary shaped potential barrier. The result is simple and intuitive but without approximation beyond the…

生物大分子 · 定量生物学 2008-07-10 Bob Eisenberg

Electronic conduction in conjugated polymers is of emerging technological interest for high-performance optoelectronic and thermoelectric devices. A completely new aspect and understanding of the conduction mechanism on conducting polymers…

材料科学 · 物理学 2015-08-18 Asli Ugur , Ferhat Katmis , Mingda Li , Lijun Wu , Yimei Zhu , Kripa K. Varanasi , Karen K. Gleason

Polymer translocation across a corrugated channel is a paradigmatic stochastic process encountered in diverse systems. The instance of time when a polymer first arrives to some prescribed location defines an important characteristic time…

软凝聚态物质 · 物理学 2019-01-30 Paolo Malgaretti , Gleb Oshanin

We consider the dynamics of a translocation process of a flexible linear polymer through a nanopore into an environment of active rods in the {\it trans} side. Using Langevin dynamics simulations we find that the rods facilitate…

软凝聚态物质 · 物理学 2022-11-15 Hamidreza Khalilian , Jalal Sarabadani , Tapio Ala-Nissila

This paper studies the mechanisms of dispersion in the laminar flow through the pore space of a $3$-dimensional porous medium. We focus on pre-asymptotic transport prior to the asymptotic hydrodynamic dispersion regime, in which solute…

流体动力学 · 物理学 2018-03-05 Marco Dentz , Matteo Icardi , Juan J. Hidalgo

We analyze the diffusive transport of Brownian particles in narrow channels with periodically varying cross-section. The geometrical confinements lead to entropic barriers, the particle has to overcome in order to proceed in transport…

统计力学 · 物理学 2012-01-06 P. S. Burada , G. Schmid , Y. Li , P. Hanggi

Transport of molecules across membrane channels is investigated theoretically using exactly solvable discrete stochastic site-binding models. It is shown that the interaction potential between molecules and the channel has a strong effect…

软凝聚态物质 · 物理学 2009-11-11 Anatoly B. Kolomeisky

Tracer-diffusion of small molecules through dense systems of chain polymers is studied within an athermal lattice model, where hard core interactions are taken into account by means of the site exclusion principle. An approximate mapping of…

软凝聚态物质 · 物理学 2009-11-07 O. Durr , T. Volz , W. Dieterich , A. Nitzan

A hydrodynamic model for determining the electrophoretic speed of a polyelectrolyte through a nanopore is presented. It is assumed that the speed is determined by a balance of electrical and viscous forces arising from within the pore and…

化学物理 · 物理学 2011-11-09 Sandip Ghosal

We consider the translocation dynamics of a polymer chain forced through a nanopore by an external force on its head monomer on the trans side. For a proper theoretical treatment we generalize the iso-flux tension propagation (IFTP) theory…

软凝聚态物质 · 物理学 2018-02-14 Jalal Sarabadani , Bappa Ghosh , Srabanti Chaudhury , Tapio Ala-Nissila

We study the driven translocation of a semi-flexible polymer through a nanopore by means of a modified version of the iso-flux tension propagation theory (IFTP), and extensive molecular dynamics (MD) simulations. We show that in contrast to…

软凝聚态物质 · 物理学 2016-12-28 Jalal Sarabadani , Timo Ikonen , Harri Mökkönen , Tapio Ala-Nissila , Spencer Carson , Meni Wanunu

We study molecular diffusion in linear nanopores with different types of roughness in the so-called Knudsen regime. Knudsen diffusion represents the limiting case of molecular diffusion in pores, where mutual encounters of the molecules…

无序系统与神经网络 · 物理学 2007-05-23 S. Zschiegner , S. Russ , A. Bunde , J. Kärger

Using Langevin dynamics simulations, we investigate the dynamics of a flexible polymer translocation into a confined area under a driving force through a nanopore. We choose an ellipsoidal shape for the confinement and consider the…

软凝聚态物质 · 物理学 2012-12-06 Kehong Zhang , Kaifu Luo

We review recent progress on the theory of dynamics of polymer translocation through a nanopore based on the iso-flux tension propagation (IFTP) theory. We investigate both pore-driven translocation of flexible and a semi-flexible polymers,…

软凝聚态物质 · 物理学 2018-10-16 Jalal Sarabadani , Tapio Ala-Nissila

We develop a correlation-corrected transport theory in order to predict ionic and polymer transport properties of membrane nanopores in physical conditions where mean-field electrostatics breaks down. The experimentally observed low KCl…

软凝聚态物质 · 物理学 2014-11-06 Sahin Buyukdagli , Tapio Ala-Nissila

This paper presents experimental results about transport of dilute suspensions of nano-objects in silicon-glass micrometric and sub-micrometric channels. Two kinds of objects are used: solid, rigid latex beads and spherical capsule-shaped,…

Using Langevin dynamics simulations, we investigate the dynamics of chaperone-assisted translocation of a flexible polymer through a nanopore. We find that increasing the binding energy $\epsilon$ between the chaperone and the chain and the…

软凝聚态物质 · 物理学 2011-08-26 Wancheng Yu , Kaifu Luo

Many biological and artificial transport channels function without direct input of metabolic energy during a transport event and without structural rearrangements involving transitions from a 'closed' to an 'open' state. Nevertheless, such…

亚细胞过程 · 定量生物学 2009-11-13 Anton Zilman

In this paper we present theoretical analysis of the electron transport in conducting polymers. We concentrate on the study of the effects of temperature on characteristics of the transport. We treat a conducting polymers in a metal state…

材料科学 · 物理学 2008-10-23 Natalya A. Zimbovskaya

Molecules with complex internal structure in time-dependent periodic potentials are studied by using short Rubinstein-Duke model polymers as an example. We extend our earlier work on transport in stochastically varying potentials to cover…

统计力学 · 物理学 2015-05-18 Janne Kauttonen , Juha Merikoski