相关论文: Statistical mechanics of columnar DNA assemblies
Histone octamers show a heat-induced mobility along DNA. Recent theoretical studies have established two mechanisms that are qualitatively and quantitatively compatible with in vitro experiments on nucleosome sliding: Octamer repositiong…
We discuss a {\em family} of planar (two-dimensional) systems with the following phase strucure: a Fermi liquid, which goes by a second order transition (with non classical exponent even in mean-field) to an intermediate, inhomogeneous…
Ensembles of particles rotating in a two-dimensional fluid can exhibit chaotic dynamics yet develop signatures of hidden order. Such "rotors" are found in the natural world spanning vastly disparate length scales - from the rotor proteins…
We develop an understanding of the anomalous metal state of the parent compounds of recently discovered iron based superconductors starting from a strong coupling viewpoint, including orbital degrees of freedom. On the basis of an…
We study spin S=1 and S=3/2 Heisenberg antiferromagnets on a cubic lattice focusing on spin solid states. Using Schwinger boson formulation for spins, we start in a U(1) spin liquid phase proximate to Neel phase and explore possible…
A model of self-avoiding walk with suitable constraints on self-attraction is developed to describe the conformational behaviour of a single stranded short DNA molecule that form hairpin structure. Using exact enumeration method we…
We investigate theoretically the spiral staircase Heisenberg spin-$1/2$ ladder in the presence of antiferromagnetic long-range spin interactions and a uniform magnetic field. As a special case we also consider the Kondo necklace model. If…
Magnetic, thermodynamic, and magnetocaloric properties of a spin-1/2 Heisenberg octahedral chain with three distinct exchange interactions are investigated in an external magnetic field using the variational method, extended…
Fragmentation processes are part of a broad class of models describing the evolution of a system of particles which split apart at random. These models are widely used in biology, materials science and nuclear physics, and their asymptotic…
We present results relevant to the equilibrium organization of DNA strands of arbitrary length interacting with a spherical organizing center, suggestive of DNA-histone complexation in nucleosomes. We obtain a rich phase diagram in which a…
Concentrated solutions of short blunt-ended DNA duplexes, down to 6 base pairs, are known to order into the nematic liquid crystal phase. This self-assembly is due to the stacking interactions between the duplex terminals that promotes…
In analogy with classic rigidity problems of networks and frames, the elastic properties of hydrogels made of DNA nanostars (DNAns) are expected to strongly depend on the precise geometry of their building blocks. However, it is currently…
In order to understand the possible sequence of transitions from the disordered columnar phase to the helical phase in hexa(hexylthio)triphenylene (HHTT), we study a three-dimensional planar model with octupolar interactions inscribed on a…
When the DNA double helix is subjected to external forces it can stretch elastically to elongations reaching 100% of its natural length. These distortions, imposed at the mesoscopic or macroscopic scales, have a dramatic effect on…
We present an elastic model of B-form DNA as a stack of thin, rigid plates or base pairs that are not permitted to deform. The symmetry of DNA and the constraint of plate rigidity limit the number of bulk elastic constants contributing to a…
Two-leg spin-$\frac12$ ladders with anisotropy and two different dimerization patterns are analyzed at zero temperature. This model is equivalent to a modulated interacting (Kitaev) ladder. The Hartree-Fock mean-field approximation reduces…
We explore in detail the angular dependent vortex dynamics in type II superconductors with aligned columnar defects introduced by irradiation with very energetic heavy-ions. We use dc magnetization measurements deep in the vortex solid…
The simplest model of DNA mechanics describes the double helix as a continuous rod with twist and bend elasticity. Recent work has discussed the relevance of a little-studied coupling $G$ between twisting and bending, known to arise from…
A two-leg spin-1/2 ladder with diagonal interactions is investigated numerically. We focus our attention on the possibility of columnar dimer phase, which was recently predicted based on a reformulated bosonization theory. By using density…
We examine the elastic model of short circular DNA. We obtain analytic expressions for configurations, elastic energy, twist and linking number of our solutions. We find the onset of the plectonemic transition. We suggest ways to use our…