中文
相关论文

相关论文: Improved neighbor list algorithm in molecular simu…

200 篇论文

We propose neighborhood-based core decomposition: a novel way of decomposing hypergraphs into hierarchical neighborhood-cohesive subhypergraphs. Alternative approaches to decomposing hypergraphs, e.g., reduction to clique or bipartite…

社会与信息网络 · 计算机科学 2023-04-11 Naheed Anjum Arafat , Arijit Khan , Arpit Kumar Rai , Bishwamittra Ghosh

Parametric search has been widely used in geometric algorithms. Cole's improvement provides a way of saving a logarithmic factor in the running time over what is achievable using the standard method. Unfortunately, this improvement comes at…

数据结构与算法 · 计算机科学 2013-06-14 Michael T. Goodrich , Paweł Pszona

Selecting a good column (or row) subset of massive data matrices has found many applications in data analysis and machine learning. We propose a new adaptive sampling algorithm that can be used to improve any relative-error column selection…

数据结构与算法 · 计算机科学 2015-10-15 Saurabh Paul , Malik Magdon-Ismail , Petros Drineas

One of the great challenges of modern science is to faithfully model, and understand, matter at a wide range of scales. Starting with atoms, the vastness of the space of possible configurations poses a formidable challenge to any simulation…

材料科学 · 物理学 2017-08-28 Sebastian E. Ahnert , William P. Grant , Chris J. Pickard

Determining the number of clusters in a dataset is a fundamental issue in data clustering. Many methods have been proposed to solve the problem of selecting the number of clusters, considering it to be a problem with regard to model…

机器学习 · 计算机科学 2022-10-04 Ryosuke Motegi , Yoichi Seki

Decentralized learning over distributed datasets can have significantly different data distributions across the agents. The current state-of-the-art decentralized algorithms mostly assume the data distributions to be Independent and…

机器学习 · 计算机科学 2023-03-22 Sai Aparna Aketi , Sangamesh Kodge , Kaushik Roy

In this paper, we present several improvements in the parallelization of the in-place merge algorithm, which merges two contiguous sorted arrays into one with an O(T) space complexity (where T is the number of threads). The approach divides…

分布式、并行与集群计算 · 计算机科学 2020-05-27 Berenger Bramas , Quentin Bramas

Practical optimization problems may contain different kinds of difficulties that are often not tractable if one relies on a particular optimization method. Different optimization approaches offer different strengths that are good at…

神经与进化计算 · 计算机科学 2024-07-08 Ankur Sinha , Dhaval Pujara , Hemant Kumar Singh

Low-rank methods have shown success in accelerating simulations of a collisionless plasma described by the Vlasov equation, but still rely on computationally costly linear algebra every time step. We propose a data-driven factorization…

数值分析 · 数学 2025-01-09 Bhavana Jonnalagadda , Stephen Becker

In this paper we have studied downlink packet scheduling algorithms proposed for LTE cellular networks. The study emphasize on three most promising scheduling algorithms such as: FLS, EXP rule and LOG rule. The performance of these three…

网络与互联网体系结构 · 计算机科学 2014-08-27 Biswapratapsingh Sahoo

Skin modeling is an ongoing research area that highly benefits from modern parallel algorithms. This article aims at applying shape optimization to compute cell size and arrangement for elastic energy minimization of a cellular composite…

计算物理 · 物理学 2020-05-05 Jose Pinzon , Martin Siebenborn , Andreas Vogel

Eukaryotic cells maintain their inner order by a hectic process of distillation of molecular factors taking place on the surface of their lipid membranes. To understand the properties of this molecular sorting process, a physical model of…

软凝聚态物质 · 物理学 2023-08-16 A. Piras , E. Floris , L. Dall'Asta , A. Gamba

We study the problem of executing an application represented by a precedence task graph on a parallel machine composed of standard computing cores and accelerators. Contrary to most existing approaches, we distinguish the allocation and the…

分布式、并行与集群计算 · 计算机科学 2017-11-20 Marcos Amaris , Giorgio Lucarelli , Clément Mommessin , Denis Trystram

We present a new clustering method in the form of a single clustering equation that is able to directly discover groupings in the data. The main proposition is that the first neighbor of each sample is all one needs to discover large chains…

计算机视觉与模式识别 · 计算机科学 2019-03-01 M. Saquib Sarfraz , Vivek Sharma , Rainer Stiefelhagen

A distributed algorithm is described for solving a linear algebraic equation of the form $Ax=b$ assuming the equation has at least one solution. The equation is simultaneously solved by $m$ agents assuming each agent knows only a subset of…

系统与控制 · 计算机科学 2015-03-04 Shaoshuai Mou , Ji Liu , A. Stephen Morse

We propose a simple and fast method for providing a high quality solution for the sum-interference minimization problem. As future networks are deployed in high density urban areas, improved clustering methods are needed to provide low…

社会与信息网络 · 计算机科学 2021-11-02 Péter L. Erdős , Tamás Róbert Mezei , Yiding Yu , Xiang Chen , Wei Han , Bo Bai

Optimized spatial partitioning algorithms are the corner stone of many successful experimental designs and statistical methods. Of these algorithms, the Centroidal Voronoi Tessellation (CVT) is the most widely utilized. CVT based methods…

统计方法学 · 统计学 2017-01-20 Casey Kneale , Dominic Poerio , Karl S. Booksh

A new permutation decoding approach for polar codes is presented. The complexity of the algorithm is similar to that of a successive cancellation list (SCL) decoder, while it can be implemented with the latency of a successive cancellation…

信息论 · 计算机科学 2019-01-18 Mikhail Kamenev , Yulia Kameneva , Oleg Kurmaev , Alexey Maevskiy

Polar codes asymptotically achieve the symmetric capacity of memoryless channels, yet their error-correcting performance under successive-cancellation (SC) decoding for short and moderate length codes is worse than that of other modern…

信息论 · 计算机科学 2015-12-25 Gabi Sarkis , Pascal Giard , Alexander Vardy , Claude Thibeault , Warren J. Gross

We present several quantum algorithms for performing nearest-neighbor learning. At the core of our algorithms are fast and coherent quantum methods for computing distance metrics such as the inner product and Euclidean distance. We prove…

量子物理 · 物理学 2014-12-12 Nathan Wiebe , Ashish Kapoor , Krysta Svore