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Tau-leaping is a family of algorithms for the approximate simulation of the discrete state continuous time Markov chains. Motivation for the development of such methods can be found, for instance, in the fields of chemical kinetics and…

概率论 · 数学 2020-08-10 Viktor Reshniak , Abdul Khaliq , David Voss

Understanding molecular structure, dynamics, and reactivity requires bridging processes that occur across widely separated time scales. Conventional molecular dynamics simulations provide atomistic resolution, but their femtosecond time…

化学物理 · 物理学 2025-10-10 Juan Viguera Diez , Mathias Schreiner , Simon Olsson

In recent years it is increasingly being recognized that biochemical signals are not necessarily constant in time and that the temporal dynamics of a signal can be the information carrier. Moreover, it is now well established that…

分子网络 · 定量生物学 2015-06-17 Wiet de Ronde , Pieter Rein ten Wolde

Microscopic mechanisms of natural processes are frequently understood in terms of random walk models by analyzing local particle transitions. This is because these models properly account for dynamic processes at the molecular level and…

统计力学 · 物理学 2021-06-16 Jaeoh Shin , Alexander M. Berezhkovskii , Anatoly B. Kolomeisky

Oscillatory systems with time-delayed pulsatile feedback appear in various applied and theoretical research areas, and received a growing interest in the last years. For such systems, we report a remarkable scenario of destabilization of a…

混沌动力学 · 物理学 2015-05-28 Vladimir Klinshov , Leonhard Lücken , Dmitry Shchapin , Vladimir Nekorkin , Serhiy Yanchuk

Estimating the parameters governing the dynamics of a system is a prerequisite for its optimal control. We present a simple but powerful method that we call STEADY, for STochastic Estimation algorithm for DYnamical variables, to estimate…

量子物理 · 物理学 2019-05-29 Stefan Krastanov , Sisi Zhou , Steven T. Flammia , Liang Jiang

Stochastic quantization offers the opportunity to simulate field theories with a complex action. In some theories unstable trajectories are prevalent when a constant stepsize is employed. We construct algorithms for generating an adaptive…

高能物理 - 格点 · 物理学 2014-11-20 Gert Aarts , Frank A. James , Erhard Seiler , Ion-Olimpiu Stamatescu

Equilibrium statistical mechanics is intended to link the microscopic dynamics of particles to the thermodynamic laws for macroscopic quantities. However, the modern statistical theory is faced with significant difficulties, as applied to…

统计力学 · 物理学 2016-03-15 A. G. Godizov , A. A. Godizov

A new horizontally explicit/vertically implicit (HEVI) time splitting scheme for atmospheric modelling is introduced, for which the horizontal divergence terms are applied within the implicit vertical substep. The new HEVI scheme is…

数值分析 · 数学 2021-06-30 David Lee , Artur Palha

The present paper deals with the problem of improving the efficiency of large scale turbulent flow simulations. The high-fidelity methods for modelling turbulent flows become available for a wider range of applications thanks to the…

计算物理 · 物理学 2018-04-10 Boris Krasnopolsky

In this article we are interested in the boundary stabilization in finite time of one-dimensional linear hyperbolic balance laws with coefficients depending on time and space. We extend the so called "backstepping method" by introducing…

最优化与控制 · 数学 2020-11-30 Jean-Michel Coron , Long Hu , Guillaume Olive , Peipei Shang

Multistationarity in biological systems is a mechanism of cellular decision making. In particular, signaling pathways regulated by protein phosphorylation display features that facilitate a variety of responses to different biological…

亚细胞过程 · 定量生物学 2011-07-05 Elisenda Feliu , Carsten Wiuf

Multirhythmicity, a form of multistability, in an oscillator is an intriguing phenomenon found across many branches of science. From an application point of view, while the multirhythmicity is sometimes desirable as it presents us with many…

适应与自组织系统 · 物理学 2021-02-03 Sandip Saha , Sagar Chakraborty , Gautam Gangopadhyay

Computing accurate periodic responses in strongly nonlinear or even non-smooth vibration systems remains a fundamental challenge in nonlinear dynamics. Existing numerical methods, such as the Harmonic Balance Method (HBM) and the Shooting…

数值分析 · 数学 2025-10-28 Limin Cao , Yanmao Chen , Li Wang , Loic Salles , Zechang Zheng

We study Boundary time crystals (BTCs) in the presence of non-Markovian dynamics. In contrast to BTCs observed in earlier works in the Markovian regime, we show that non-Markovian dynamics can be highly beneficial for stabilizing BTCs over…

量子物理 · 物理学 2026-05-08 Bandita Das , Rahul Ghosh , Victor Mukherjee

We extend the phase field crystal model to accommodate exact atomic configurations and vacancies by requiring the order parameter to be non-negative. The resulting theory dictates the number of atoms and describes the motion of each of…

计算物理 · 物理学 2009-02-10 Pak Yuen Chan , Nigel Goldenfeld , Jon Dantzig

If a bus line becomes unstable, passengers waiting time will be lengthened and buses capacities will be mismatched. To stabilize a high-frequency bus line, many holding strategies have been proposed. Among these strategies, some need to…

系统与控制 · 电气工程与系统科学 2020-06-17 Shengxue He

We propose a time-delayed model for the study of active mode-locking that is valid for large values of the round-trip gain and losses. It allows us to access the typical regimes encountered in semiconductor lasers and to perform an extended…

光学 · 物理学 2024-10-08 Elias R. Koch , Svetlana V. Gurevich , Julien Javaloyes

Employing a recently developed method that is numerically accurate within a model space simulating the real-time dynamics of few-body systems interacting with macroscopic environmental quantum fields, we analyze the full dynamics of an…

量子物理 · 物理学 2013-03-07 Javier Prior , Inés de Vega , Alex W. Chin , Susana F. Huelga , Martin B. Plenio

We discuss the self-consistent dynamics of plasmas by means of hamiltonian formalism for a system of $N$ near-resonant electrons interacting with a single Langmuir wave. The connection with the Vlasov description is revisited through the…

等离子体物理 · 物理学 2017-05-24 Daniel Santos , Yves Elskens