相关论文: Sum rules of codon usage probabilities
A representation of the genetic code as a six-dimensional Boolean hypercube is proposed. It is assumed here that this structure is the result of the hierarchical order of the interaction energies of the bases in codon-anticodon recognition.…
We describe the distribution of Guanine and Cytosine (GC) content in the third codon position (GC3) distributions in different species, analyze evolutionary trends and discuss differences between genes and organisms with distinct GC3…
A calculation of the mass spectrum in the baryon decuplet sector is presented using the method of QCD sum rules. Sum rules are derived for states of spin-parity 3/2+- and 1/2+ using both the conventional method and a parity-projection…
The rules that specify how the information contained in DNA codes amino acids, is called "the genetic code". Using a simplified version of the Penna nodel, we are using computer simulations to investigate the importance of the genetic code…
A plausible architecture of an ancient genetic code is derived from an extended base triplet vector space over the Galois field of the extended base alphabet {D, G, A, U, C}, where the letter D represents one or more hypothetical bases with…
We develop rigorous, analytic techniques to study the behaviour of biased random walks on combs. This enables us to calculate exactly the spectral dimension of random comb ensembles for any bias scenario in the teeth or spine. Two specific…
The quantum enveloping algebra U_q(sl(2) \oplus sl(2)) in the limit q \to 0 is proposed as a symmetry algebra for the genetic code. In this approach the triplets of nucleotids or codons in the DNA chain are classified in crystal bases,…
Modelising the translation errors by suitable mathematical operators in the crystal basis model of the genetic code and requiring that codons prone to be misread encode the same amino-acid, the main features of the organisation in…
A new approach of the QCD sum rule is proposed in which positive and negative-parity baryons couple with each other. With positive and negative-parity states explicitly taken into account, sum rules are derived by means of the dispersion…
Probability of coincidental clustering among the orbits of comets, asteroids and meteoroids depends on many factors like: the size of the orbital sample searched for clusters or the size of the identified group, it is different for groups…
Predictions for angular correlations between an arbitrary number of partons are derived in the high energy limit. The quantities considered depend on angles and primary energy through a single variable $\epsilon$ which implies certain…
A model for the Pomeron at $t=0$ is suggested. It is based on the idea of a finite sum of ladder diagrams in QCD. Accordingly, the number of $s$-channel gluon rungs and correspondingly the powers of logarithms in the forward scattering…
Imposing a minimum principle in the framework of the so called crystal basis model of the genetic code, we determine the structure of the minimum set of anticodons which allows the translational-transcription for animal mitochondrial code.…
The large discrepancy between the values of the free energy for DNA dinucleotides (or dimers) measured by different teams has raised a yet unsettled debate. Here the free energy is fitted by a three parameter empiric formula derived in the…
We use QCD sum rules to determine the difference between moments of the non-singlet structure functions. This combination decouples from the singular behaviour of the structure functions near x=1 as calculated in the quark-gluon basis and…
Bacterial genomes and large-scale computer software projects both consist of a large number of components (genes or software packages) connected via a network of mutual dependencies. Components can be easily added or removed from individual…
Several sources, both experimental and theoretical, subject inclusive jet cross section measurements to large uncertainties. On the experimental side, the energy scale contributes between 10% and 30% uncertainties. On the theoretical side,…
We have developed an efficient and reliable methodology for crystal structure prediction, merging ab initio total-energy calculations and a specifically devised evolutionary algorithm. This method allows one to predict the most stable…
A comprehensive study is made for the magnetic moments of octet baryons in the method of QCD sum rules. A complete set of QCD sum rules is derived using the external field method and generalized interpolating fields. For each member, three…
The QCD sum-rule method has been widely used in studying various baryon properties. For a given problem, there are usually more than one sum rules and they do not work equally well. In this paper, we point out that chirality plays an…