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The analysis of the leukemia data from Whitehead/MIT group is a discriminant analysis (also called a supervised learning). Among thousands of genes whose expression levels are measured, not all are needed for discriminant analysis: a gene…

生物物理 · 物理学 2007-05-23 Wentian Li , Yaning Yang

Machine Learning methods have of late made significant efforts to solving multidisciplinary problems in the field of cancer classification using microarray gene expression data. Feature subset selection methods can play an important role in…

计算工程、金融与科学 · 计算机科学 2013-03-04 G. Prat , Ll. Belanche

Various approaches to gene selection for cancer classification based on microarray data can be found in the literature and they may be grouped into two categories: univariate methods and multivariate methods. Univariate methods look at each…

定量方法 · 定量生物学 2015-06-18 Min Xu , Rudy Setiono

DNA microarray gene-expression data has been widely used to identify cancerous gene signatures. Microarray can increase the accuracy of cancer diagnosis and prognosis. However, analyzing the large amount of gene expression data from…

神经与进化计算 · 计算机科学 2024-11-21 Maryam Eshraghi Evari , Md Nasir Sulaiman , Amir Rajabi Behjat

Cancer detection is one of the key research topics in the medical field. Accurate detection of different cancer types is valuable in providing better treatment facilities and risk minimization for patients. This paper deals with the…

定量方法 · 定量生物学 2022-05-31 Yasamin Kowsari , Sanaz Nakhodchi , Davoud Gholamiangonabadi

Gene expression data is widely used in disease analysis and cancer diagnosis. However, since gene expression data could contain thousands of genes simultaneously, successful microarray classification is rather difficult. Feature selection…

机器学习 · 计算机科学 2016-12-28 Li-Yeh Chuang , Chao-Hsuan Ke , Cheng-Hong Yang

Late diagnosis and high costs are key factors that negatively impact the care of cancer patients worldwide. Although the availability of biological markers for the diagnosis of cancer type is increasing, costs and reliability of tests…

机器学习 · 计算机科学 2019-08-20 Sterling Ramroach , Melford John , Ajay Joshi

Prostate cancer is among the most common cancer in males and its heterogeneity is well known. Its early detection helps making therapeutic decision. There is no standard technique or procedure yet which is full-proof in predicting cancer…

机器学习 · 计算机科学 2018-12-18 Khalid Raza , Atif N Hasan

Motivation: Gene selection has become a common task in most gene expression studies. The objective of such research is often to identify the smallest possible set of genes that can still achieve good predictive performance. The problem of…

统计方法学 · 统计学 2015-11-25 Stéphane Guerrier , Nabil Mili , Roberto Molinari , Samuel Orso , Marco Avella-Medina , Yanyuan Ma

The high-throughput data generated by microarray experiments provides complete set of genes being expressed in a given cell or in an organism under particular conditions. The analysis of these enormous data has opened a new dimension for…

计算工程、金融与科学 · 计算机科学 2012-11-12 Khalid Raza , Akhilesh Mishra

Over the past few years, there has been a considerable spread of microarray technology in many biological patterns, particularly in those pertaining to cancer diseases like leukemia, prostate, colon cancer, etc. The primary bottleneck that…

定量方法 · 定量生物学 2020-07-20 Parth Patel , Kalpdrum Passi , Chakresh Kumar Jain

Gene expression analysis aims at identifying the genes able to accurately predict biological parameters like, for example, disease subtyping or progression. While accurate prediction can be achieved by means of many different techniques,…

统计方法学 · 统计学 2008-09-11 Christine De Mol , Sofia Mosci , Magali Traskine , Alessandro Verri

Gene expression analysis is a critical method for cancer classification, enabling precise diagnoses through the identification of unique molecular signatures associated with various tumors. Identifying cancer-specific genes from gene…

We present a novel coupled two-way clustering approach to gene microarray data analysis. The main idea is to identify subsets of the genes and samples, such that when one of these is used to cluster the other, stable and significant…

生物物理 · 物理学 2009-11-06 G. Getz , E. Levine , E. Domany

In this work, we study and analyze different feature selection algorithms that can be used to classify cancer subtypes in case of highly varying high-dimensional data. We apply three different feature selection methods on five different…

机器学习 · 计算机科学 2021-10-01 Vaibhav Sinha , Siladitya Dash , Nazma Naskar , Sk Md Mosaddek Hossain

Microarray data are often used to determine which genes are differentially expressed between groups, for example, between treatment and control groups. There are methods of determining which genes have a high probability of differential…

定量方法 · 定量生物学 2007-05-23 David R. Bickel

Transcriptional profiling on microarrays to obtain gene expressions has been used to facilitate cancer diagnosis. We propose a deep generative machine learning architecture (called DeepCancer) that learn features from unlabeled microarray…

人工智能 · 计算机科学 2016-12-14 Rajendra Rana Bhat , Vivek Viswanath , Xiaolin Li

Microarray is a technology to quantitatively monitor the expression of large number of genes in parallel. It has become one of the main tools for global gene expression analysis in molecular biology research in recent years. The large…

定量方法 · 定量生物学 2015-06-18 Min Xu

BACKGROUND: Breast cancer has emerged as one of the most prevalent cancers among women leading to a high mortality rate. Due to the heterogeneous nature of breast cancer, there is a need to identify differentially expressed genes associated…

机器学习 · 计算机科学 2021-11-30 Sheetal Rajpal , Ankit Rajpal , Manoj Agarwal , Naveen Kumar

In recent years the importance of finding a meaningful pattern from huge datasets has become more challenging. Data miners try to adopt innovative methods to face this problem by applying feature selection methods. In this paper we propose…

机器学习 · 计算机科学 2014-03-11 Mehdi Naseriparsa , Amir-masoud Bidgoli , Touraj Varaee
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