相关论文: Recombination semigroups on measure spaces
In this paper we present an efficient numerical approach based on the Renormalization Group method for the computation of self-similar dynamics. The latter arise, for instance, as the long-time asymptotic behavior of solutions to nonlinear…
We prove a convolution formula for the conjugacy classes in symmetric groups conjectured by the second author. A combinatorial interpretation of coefficients is provided. As a main tool we introduce new semigroup of partial permutations. We…
The problem of classification into symmetry integrable classes is solved for a family of second order nonlinear evolution equations labeled by arbitrary functions. Four nonequivalent symmetry integrable classes are thus obtained and the…
The renormalization group has proven to be a very powerful tool in physics for treating systems with many length scales. Here we show how it can be adapted to provide a new class of algorithms for discrete optimization. The heart of our…
We derive an evolution equation for the generating functional which accounts for processes for both gluon emission and recombination. In terms of color dipoles, the kernel of this equation describes evolution as a classical branching…
We study the role of recombination, as practiced by genetically-competent bacteria, in speeding up Darwinian evolution. This is done by adding a new process to a previously-studied Markov model of evolution on a smooth fitness landscape;…
We propose a new definition of renormalized solution to linear equation with self-adjoint operator generating a Markov semigroup and bounded Borel measure on the right-hand side. We give a uniqueness result and study the structure of…
Genetic and evolution algebras arise naturally from applied probability and stochastic processes. Gibbs measures describe interacting systems commonly studied in thermodynamics and statistical mechanics with applications in several fields.…
We study the continuous-time evolution of the recombination equation of population genetics. This evolution is given by a differential equation that acts on a product probability space, and its solution can be described by a Markov chain on…
Motivated by empirical observations of algebraic duplicated sequence length distributions in a broad range of natural genomes, we analytically formulate and solve a class of simple discrete duplication/substitution models that generate…
Non-positive, Markovian semigroups are sometimes used to describe the time evolution of subsystems immersed in an external environment. A widely adopted prescription to avoid the appearance of negative probabilities is to eliminate from the…
Conventional population genetics considers the evolution of a limited number of genotypes corresponding to phenotypes with different fitness. As model phenotypes, in particular RNA secondary structure, have become computationally tractable,…
Reciprocal transformations mix the role of the dependent and independent variables to achieve simpler versions or even linearized versions of nonlinear PDEs. These transformations help in the identification of a plethora of PDEs available…
We study semi-linear evolutionary problems where the linear part is the generator of a positive $C_0$-semigroup. The non-linear part is assumed to be quasi-increasing. Given an initial value in between a sub- and a super-solution of the…
An evolving Riemannian manifold $(M,g_t)_{t\in I}$ consists of a smooth $d$-dimensional manifold $M$, equipped with a geometric flow $g_t$ of complete Riemannian metrics, parametrized by $I=(-\infty,T)$. Given an additional $C^{1,1}$ family…
Patterns on numerical semigroups are multivariate linear polynomials, and they are said to be admissible if there exists a numerical semigroup such that evaluated at any nonincreasing sequence of elements of the semigroup gives integers…
Bacteria are known to exchange genetic information by horizontal gene transfer. Since the frequency of homologous recombination depends on the similarity of recombining segments, several studies examined whether this could lead to the…
Using a reformulation of the nonlinear multiplet as a gauge multiplet, we discuss its dynamics. We show that the nonlinear ``duality'' that appears to relate the model to a conventional $\sigma$-model introduces a new sector into the…
Phase equations describing the evolution of large scale modulation of spatially periodic patterns in two dimensional systems are derived by employing the renormalization group method. A general formula for phase diffusion coefficients is…
We study the structure of the generator of a symmetric, conservative quantum dynamical semigroup with norm-bounded generator on a von Neumann algebra equipped with a faithful semifinite trace. For von Neumann algebras with abelian commutant…