相关论文: Subdominant matroid ultrametrics
We study the geometry of metrics and convexity structures on the space of phylogenetic trees, which is here realized as the tropical linear space of all \ ultrametrics. The ${\rm CAT}(0)$-metric of Billera-Holmes-Vogtman arises from the…
The metric space of phylogenetic trees defined by Billera, Holmes, and Vogtmann, which we refer to as BHV space, provides a natural geometric setting for describing collections of trees on the same set of taxa. However, it is sometimes…
We considered the possibility that the oriented matroid theory is connected with supersymmetry via the Grassmann-Plucker relations. The main reason for this, is that such relations arise in both in the chirotopes definition of an oriented…
We study the geometry of tropical Fermat--Weber points, that is, optimal solutions to a location problem over a projective space using a dissimilarity measure derived from the tropical metric. It is well-known that for a given sample, such…
The necessary and sufficient conditions under which a given family $\mathcal{F}$ of subsets of finite set $X$ coincides with the family $\mathbf{B}_X$ of all balls generated by some ultrametric $d$ on $X$ are found. It is shown that the…
The maximization of submodular functions have found widespread application in areas such as machine learning, combinatorial optimization, and economics, where practitioners often wish to enforce various constraints; the matroid constraint…
Finding the most parsimonious tree inside a phylogenetic network with respect to a given character is an NP-hard combinatorial optimization problem that for many network topologies is essentially inapproximable. In contrast, if the network…
Speyer recognized that matroids encode the same data as a special class of tropical linear spaces and Shaw interpreted tropically certain basic matroid constructions; additionally, Frenk developed the perspective of tropical linear spaces…
While the positive Grassmannian is deeply understood through the rich combinatorics of plabic graphs and positroid cells, its tropical counterpart, the positive tropical Grassmannian Trop$_{>0}G(k,n)$, has lacked a comparable structural…
Fitting distances to tree metrics and ultrametrics are two widely used methods in hierarchical clustering, primarily explored within the context of numerical taxonomy. Given a positive distance function…
We study the following problem: Given a variable of interest, we would like to find a best linear predictor for it by choosing a subset of $k$ relevant variables obeying a matroid constraint. This problem is a natural generalization of…
In tropical algebraic geometry, the solution sets of polynomial equations are piecewise-linear. We introduce the tropical variety of a polynomial ideal, and we identify it with a polyhedral subcomplex of the Grobner fan. The tropical…
We introduce the notion of real phase structure on rational polyhedral fans in Euclidean space. Such a structure consists of an assignment of affine spaces over $\mathbb{Z}/2\mathbb{Z}$ to each top dimensional face of the fan subject to two…
Let $G$ be a connected graph and $W$ be a set of vertices of $G$. The representation multiset of a vertex $v$ with respect to $W$, $r_m (v|W)$, is defined as a multiset of distances between $v$ and the vertices in $W$. If $r_m (u |W) \neq…
The Maximum Agreement Forest (Maf) problem is a well-studied problem in evolutionary biology, which asks for a largest common subforest of a given collection of phylogenetic trees with identical leaf label-set. However, the previous work…
The local tree-width of a graph G=(V,E) is the function ltw^G: N -> N that associates with every natural number r the maximal tree-width of an r-neighborhood in G. Our main graph theoretic result is a decomposition theorem for graphs with…
Given a graph and a root, the Maximum Bounded Rooted-Tree Packing (MBRTP) problem aims at finding K rooted-trees that span the largest subset of vertices, when each vertex has a limited outdegree. This problem is motivated by peer-to-peer…
We show that, if $M$ is a simple rank-$n$ matroid with no $\ell$-point line minor and no minor isomorphic to the cycle matroid of a $t$-vertex complete graph, then the ratio $|M| / n$ is bounded above by a singly exponential function of…
Rigid graph theory is an active area with many open problems, especially regarding embeddings in $\mathbb{R}^d$ or other manifolds, and tight upper bounds on their number for a given number of vertices. Our premise is to relate the number…
Tropical Geometry and Mathematical Morphology share the same max-plus and min-plus semiring arithmetic and matrix algebra. In this chapter we summarize some of their main ideas and common (geometric and algebraic) structure, generalize and…