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Population-size dependent branching processes (PSDBP) and controlled branching processes (CBP) are two classes of branching processes widely used to model biological populations that exhibit logistic growth. In this paper we develop…

概率论 · 数学 2023-08-03 Peter Braunsteins , Sophie Hautphenne , James Kerlidis

Finding balanced, highly nonlinear Boolean functions is a difficult problem where it is not known what nonlinearity values are possible to be reached in general. At the same time, evolutionary computation is successfully used to evolve…

神经与进化计算 · 计算机科学 2022-02-18 Claude Carlet , Marko Djurasevic , Domagoj Jakobovic , Luca Mariot , Stjepan Picek

We evolve binary mux-6 trees for up to 100000 generations evolving some programs with more than a hundred million nodes. Our unbounded Long-Term Evolution Experiment LTEE GP appears not to evolve building blocks but does suggests a limit to…

神经与进化计算 · 计算机科学 2017-03-27 W. B. Langdon

Memetic Algorithms are known to be a powerful technique in solving hard optimization problems. To design a memetic algorithm one needs to make a host of decisions; selecting a population size is one of the most important among them. Most…

数据结构与算法 · 计算机科学 2015-03-13 Daniel Karapetyan , Gregory Gutin

We analyse numerically the effects of small population size in the initial transient regime of a simple example population dynamics. These effects play an important role for the numerical determination of large deviation functions of…

统计力学 · 物理学 2017-09-28 Esteban Guevara Hidalgo , Vivien Lecomte

Standard neutral population genetics theory with a strictly fixed population size has important limitations. An alternative model that allows independently fluctuating population sizes and reproduces the standard neutral evolution is…

种群与进化 · 定量生物学 2017-03-08 Thiparat Chotibut , David R. Nelson

Protein structure prediction can be shown to be an NP-hard problem; the number of conformations grows exponentially with the number of residues. The native conformations of proteins occupy a very small subset of these, hence an exploratory,…

化学物理 · 物理学 2008-02-03 Mehul M. Khimasia , Peter V. Coveney

Analyzing the computational complexity of evolutionary algorithms for binary search spaces has significantly increased their theoretical understanding. With this paper, we start the computational complexity analysis of genetic programming.…

神经与进化计算 · 计算机科学 2010-11-16 Greg Durrett , Frank Neumann , Una-May O'Reilly

This paper describes a methodology for analyzing the evolutionary dynamics of genetic programming (GP) using genealogical information, diversity measures and information about the fitness variation from parent to offspring. We introduce a…

机器学习 · 计算机科学 2021-08-25 Bogdan Burlacu , Michael Affenzeller , Michael Kommenda

Self-adaptation solutions need to periodically monitor, reason about, and adapt a running system. The adaptation step involves generating an adaptation strategy and applying it to the running system whenever an anomaly arises. In this…

软件工程 · 计算机科学 2023-08-16 Jia Li , Shiva Nejati , Mehrdad Sabetzadeh

Genomic selection (GS) is a technique that plant breeders use to select individuals to mate and produce new generations of species. Allocation of resources is a key factor in GS. At each selection cycle, breeders are facing the choice of…

基因组学 · 定量生物学 2021-07-26 Saba Moeinizade , Guiping Hu , Lizhi Wang

In this paper we describe SYNERGY, which is a highly parallelizable, linear planning system that is based on the genetic programming paradigm. Rather than reasoning about the world it is planning for, SYNERGY uses artificial selection,…

人工智能 · 计算机科学 2007-05-23 Ion Muslea

Genetic programming (GP) has the potential to generate explainable results, especially when used for dimensionality reduction. In this research, we investigate the potential of leveraging eXplainable AI (XAI) and large language models…

神经与进化计算 · 计算机科学 2024-03-07 Paula Maddigan , Andrew Lensen , Bing Xue

Test-time scaling has emerged as a promising direction for enhancing the reasoning capabilities of Large Language Models in last few years. In this work, we propose Population-Evolve, a training-free method inspired by Genetic Algorithms to…

人工智能 · 计算机科学 2025-12-23 Yanzhi Zhang , Yitong Duan , Zhaoxi Zhang , Jiyan He , Shuxin Zheng

To learn about the past from a sample of genomic sequences, one needs to understand how evolutionary processes shape genetic diversity. Most population genetic inference is based on frameworks assuming adaptive evolution is rare. But if…

种群与进化 · 定量生物学 2014-03-25 Richard A. Neher

In a geographically distributed population, assortative clustering plays an important role in evolution by modifying local environments. To examine its effects in a linear habitat, we consider a one-dimensional grid of cells, where each…

种群与进化 · 定量生物学 2021-03-16 Sunhee Chae , Nahyeon Lee , Seung Ki Baek , Hyeong-Chai Jeong

The paper reviews the results obtained for spatial population models and the evolution of the genealogies of these populations during the last decade by the author and his coworkers. The focus is on their large scale behaviour and on the…

概率论 · 数学 2019-07-17 Andreas Greven

In recent years the field of genetic programming has made significant advances towards automatic programming. Research and development of contemporary program synthesis methods, such as PushGP and Grammar Guided Genetic Programming, can…

编程语言 · 计算机科学 2020-08-11 Edward Pantridge , Lee Spector

Genetic programming is the practice of evolving formulas using crossover and mutation of genes representing functional operations. Motivated by genetic evolution we develop and solve two combinatorial games, and we demonstrate some…

组合数学 · 数学 2021-02-02 Melissa A. Huggan , Craig Tennenhouse

We review the problem of confounding in genetic association studies, which arises principally because of population structure and cryptic relatedness. Many treatments of the problem consider only a simple ``island'' model of population…

统计方法学 · 统计学 2010-10-25 William Astle , David J. Balding