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In this paper, we present a flexible and probabilistic framework for tracking topological features in time-varying scalar fields using merge trees and partial optimal transport. Merge trees are topological descriptors that record the…

计算几何 · 计算机科学 2025-08-26 Mingzhe Li , Xinyuan Yan , Lin Yan , Tom Needham , Bei Wang

Twisted permutation codes, introduced recently by the second and third authors, are frequency permutation arrays. They are similar to repetition permutation codes, in that they are obtained by a repetition construction applied to a smaller…

组合数学 · 数学 2015-11-24 Marzieh Akbari , Neil I. Gillespie , Cheryl E. Praeger

Natural language text corpora are often available as sets of syntactically parsed trees. A wide range of expressive tree queries are possible over such parsed trees that open a new avenue in searching over natural language text. They not…

数据库 · 计算机科学 2012-08-02 Pirooz Chubak , Davood Rafiei

We consider a real-valued path; it is possible to associate a tree to this path, and we explore the relations between the tree, the properties of $p$-variation of the path, and integration with respect to the path. In particular, the…

概率论 · 数学 2009-01-22 Jean Picard

This is a survey article on trees, with a modest number of proofs to give a flavor of the way these topologies can be efficiently handled. Trees are defined in set-theorist fashion as partially ordered sets in which the elements below each…

一般拓扑 · 数学 2007-05-23 Peter J. Nyikos

The visualization of hierarchically structured data over time is an ongoing challenge and several approaches exist trying to solve it. Techniques such as animated or juxtaposed tree visualizations are not capable of providing a good…

图形学 · 计算机科学 2020-02-11 Fabian Bolte , Mahsan Nourani , Eric D. Ragan , Stefan Bruckner

Given two rooted, labeled trees $P$ and $T$ the tree path subsequence problem is to determine which paths in $P$ are subsequences of which paths in $T$. Here a path begins at the root and ends at a leaf. In this paper we propose this…

数据结构与算法 · 计算机科学 2011-11-09 Philip Bille , Inge Li Goertz

We propose a new positional encoding method for a neural network architecture called the Transformer. Unlike the standard sinusoidal positional encoding, our approach is based on solid mathematical grounds and has a guarantee of not losing…

机器学习 · 计算机科学 2024-05-17 Tsuyoshi Idé , Jokin Labaien , Pin-Yu Chen

As part of work to connect phylogenetics with machine learning, there has been considerable recent interest in vector encodings of phylogenetic trees. We present a simple new "ordered leaf attachment" (OLA) method for uniquely encoding a…

种群与进化 · 定量生物学 2025-03-26 Harry Richman , Cheng Zhang , Frederick A. Matsen

This paper presents a nested tracking framework for analyzing cycles in 2D force networks within granular materials. These materials are composed of interacting particles, whose interactions are described by a force network. Understanding…

图形学 · 计算机科学 2024-09-11 Farhan Rasheed , Abrar Naseer , Emma Nilsson , Talha Bin Masood , Ingrid Hotz

This article aims to explain the Nested Benders algorithm for the solution of large-scale stochastic programming problems in a way that is intelligible to someone coming to it for the first time. In doing so it gives an explanation of…

最优化与控制 · 数学 2013-12-13 James Murphy

This article examines a recent body of work on stochastic processes indexed by a tree. Emphasis is on the application of this new framework to existing probability models. Proofs are largely omitted, with references provided.

概率论 · 数学 2007-05-23 Robin Pemantle

Many data are naturally modeled by an unobserved hierarchical structure. In this paper we propose a flexible nonparametric prior over unknown data hierarchies. The approach uses nested stick-breaking processes to allow for trees of…

统计方法学 · 统计学 2010-06-08 Ryan Prescott Adams , Zoubin Ghahramani , Michael I. Jordan

An ordered labeled tree is a tree in which the nodes are labeled and the left-to-right order among siblings is relevant. The edit distance between two ordered labeled trees is the minimum cost of changing one tree into the other through a…

数据结构与算法 · 计算机科学 2015-02-10 Shihyen Chen

In this paper, we give a procedure for derivation of higher dimensional periodic recurrence equations(PREs) by nested structure of complex numbers.

可精确求解与可积系统 · 物理学 2018-11-14 Tsukasa Yumibayashi

Auto-regressive neural sequence models have been shown to be effective across text generation tasks. However, their left-to-right decoding order prevents generation from being parallelized. Insertion Transformer (Stern et al., 2019) is an…

计算与语言 · 计算机科学 2023-02-01 Zhisong Zhang , Yizhe Zhang , Bill Dolan

Dynamic trees are mixtures of tree structured belief networks. They solve some of the problems of fixed tree networks at the cost of making exact inference intractable. For this reason approximate methods such as sampling or mean field…

机器学习 · 计算机科学 2013-01-18 Amos J. Storkey

Guessing Random Additive Noise Decoding (GRAND) and its variants, known for their near-maximum likelihood performance, have been introduced in recent years. One such variant, Segmented GRAND, reduces decoding complexity by generating only…

信息论 · 计算机科学 2025-12-19 Lukas Rapp , Jiewei Feng , Muriel Médard , Ken R. Duffy

The Stern diatomic sequence is closely linked to continued fractions via the Gauss map on the unit interval, which in turn can be understood via systematic subdivisions of the unit interval. Higher dimensional analogues of continued…

We study nested partitions of $R^d$ obtained by successive cuts using hyperplanes with fixed directions. We establish the number of measures that can be split evenly simultaneously by taking a partition of this kind and then distributing…

度量几何 · 数学 2014-10-14 Roman Karasev , Edgardo Roldán-Pensado , Pablo Soberón