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Given a random RNA secondary structure, $S$, we study RNA sequences having fixed ratios of nuclotides that are compatible with $S$. We perform this analysis for RNA secondary structures subject to various base pairing rules and minimum arc-…
RNA polymerase (RNAP) elongates RNA by walking along a DNA template and selectively incorporating ribonucleoside triphosphates (rNTPs). Rather than mechanically replicating the base sequence, RNAP conditions binding and chemistry on the…
The ferromagnetic transition in the Ising model is the paradigmatic example of ergodicity breaking accompanied by symmetry breaking. It is routinely assumed that the thermodynamic limit is taken with free or periodic boundary conditions.…
In this note we study the zero temperature dynamics of the Sherrington Kirkppatric model and we investigate the statistical properties of the configurations that are obtained in the large time limit. We find that the replica symmetry is…
We discuss the question of inverse symmetry breaking at non-zero temperature using the exact renormalization group. We study a two-scalar theory and concentrate on the nature of the phase transition during which the symmetry is broken. We…
The randomly pinned planar flux line array is supposed to show a phase transition to a vortex glass phase at low temperatures. This transition has been examined by using a mapping onto a 2D XY-model with random an\-iso\-tropy but without…
To characterize the pairing-specificity of RNA secondary structures as a function of temperature, we analyse the statistics of the pairing weights as follows : for each base $(i)$ of the sequence of length N, we consider the $(N-1)$ pairing…
The dynamics of the DNA denaturation is studied using the Peyrard-Bishop-Dauxois model. The denaturation rate of double stranded polymers decreases exponentially as function of length below the denaturation temperature. Above Tc, the rate…
We study an oriented first passage percolation model for the evolution of a river delta. This model is exactly solvable and occurs as the low temperature limit of the beta random walk in random environment. We analyze the asymptotics of an…
We study a 7-state Potts glass model in three dimensions with first, second, and third neighbor interactions with a bimodal distribution of couplings by Monte Carlo simulations. Our results show the existence of a spin-glass transition at a…
The thermodynamics of the O(N) linear and nonlinear sigma models in 3+1 dimensions is studied. We calculate the pressure to next-to-leading order in the 1/N expansion and show that at this order, temperature-independent renormalization is…
The de Almeida-Thouless (AT) line is the phase boundary in the temperature--magnetic field plane of an Ising spin glass at which a continuous (i.e. second-order) transition from a paramagnet to a replica-symmetry-breaking (RSB) phase…
The low $Q^2$ slopes of the the transition form factors provide a unique method to measure the sizes of the neutral pseudo-scalar mesons, since they do not have electromagnetic form factors. From the slope one obtains the "axial transition…
Chiral symmetry represents a fundamental concept lying at the core of particle and nuclear physics. Its spontaneous breaking in vacuum can be exploited to distinguish chiral hadronic partners, whose masses differ. In fact, the features of…
We formulate the RNA folding problem as an $N\times N$ matrix field theory. This matrix formalism allows us to give a systematic classification of the terms in the partition function according to their topological character. The theory is…
A simple exact-exchange density-functional method for a quasi-two-dimensional electron gas with variable density is presented. An analytical expression for the exact-exchange potential with only one occupied subband is provided, without…
The phenomenon of spontaneous symmetry breaking is investigated in the dynamic thermalization of a degenerate quantum system. A three-level system interacting with a heat bath is carefully studied to this end. It is shown that the…
Experimental studies of the thermal denaturation of DNA yield a strong indication that the transition is first order. This transition has been theoretically studied since the early sixties, mostly within an approach in which the microscopic…
When pulled along its axis, double-stranded DNA elongates abruptly at a force of about 65 pN. Two physical pictures have been developed to describe this overstretched state. The first proposes that strong forces induce a phase transition to…
An experiment to search for double beta decay processes in 96Ru and 104Ru, which are accompanied by gamma rays, has been realized in the underground Gran Sasso National Laboratories of the I.N.F.N. (Italy). Ruthenium samples with masses of…