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Finding representative reaction pathways is necessary for understanding mechanisms of molecular processes, but is considered to be extremely challenging. We propose a new method to construct reaction paths based on mean first-passage times.…

化学物理 · 物理学 2015-06-26 Sanghyun Park , Klaus Schulten

After collecting data from observations or experiments, the next step is to build an appropriate mathematical or stochastic model to describe the data so that further studies can be done with the help of the models. In this article, the…

数据分析、统计与概率 · 物理学 2023-07-19 A. M. Mathai , H. J. Haubold

These lectures deal with the problem of inductive inference, that is, the problem of reasoning under conditions of incomplete information. Is there a general method for handling uncertainty? Or, at least, are there rules that could in…

数据分析、统计与概率 · 物理学 2016-09-08 Ariel Caticha

In this paper, we propose an optimization-based mechanism to explain power law distributions, where the function that the optimization process is seeking to optimize is derived mathematically, then the behavior and interpretation of this…

物理与社会 · 物理学 2018-12-27 A. M. Khalili

In the previous papers (Kui\'{c} et al. in Found Phys 42:319-339, 2012; Kui\'{c} in arXiv:1506.02622, 2015), it was demonstrated that applying the principle of maximum information entropy by maximizing the conditional information entropy,…

统计力学 · 物理学 2016-06-14 Domagoj Kuic

For a plasma with fixed total energy, number of particles, and momentum, the distribution function that maximizes entropy is a Boltzmann distribution. If, in addition, the rearrangement of charge is constrained, as happens on ion-ion…

等离子体物理 · 物理学 2020-04-08 E. J. Kolmes , I. E. Ochs , M. E. Mlodik , N. J. Fisch

In this paper we consider a mean field approach to modeling the agents flow over a transportation network. In particular, beside a standard framework of mean field games, with controlled dynamics by the agents and costs mass-distribution…

最优化与控制 · 数学 2020-06-18 Fabio Bagagiolo , Rosario Maggistro , Raffaele Pesenti

Information theory has been taken as a prospective tool for quantifying the complexity of complex networks. In this paper, we first study the information entropy or uncertainty of a path using the information theory. Then we apply the path…

物理与社会 · 物理学 2016-05-04 Zhongqi Xu , Cunlai Pu , Jian Yang

Random walks serve as important tools for studying complex network structures, yet their dynamics in cases where transition probabilities are not static remain under explored and poorly understood. Here we study nonlinear random walks that…

混沌动力学 · 物理学 2022-06-14 Digesh Chitrakar , Per Sebastian Skardal

An informative measurement is the most efficient way to gain information about an unknown state. We present a first-principles derivation of a general-purpose dynamic programming algorithm that returns an optimal sequence of informative…

机器学习 · 计算机科学 2023-02-01 Peter N. Loxley , Ka-Wai Cheung

We present a general holistic theory for the organization of complex networks, both human-engineered and naturally-evolved. Introducing concepts of value of interactions and satisfaction as generic network performance measures, we show that…

适应与自组织系统 · 物理学 2007-07-13 Venkat Venkatasubramanian , Dimitris N. Politis , Priyan R. Patkar

Cellular development follows a stochastic yet rule-governed trajectory, though the underlying principles remain elusive. Here, we propose that cellular development follows paths of least action, aligning with foundational physical laws that…

生物物理 · 物理学 2025-04-14 Rohola Zandie , Farhan Khodaee , Yufan Xia , Elazer R. Edelman

On the basis of information theory, a new formalism of classical non-relativistic mechanics of a mass point is proposed. The particle trajectories of a general dynamical system defined on an (1+n)-dimensional smooth manifold are treated…

量子物理 · 物理学 2014-07-30 Yoshimasa Kurihara , Khiem Hong Phan , Nhi My Uyen Quach

The principle of maximum entropy provides a useful method for inferring statistical mechanics models from observations in correlated systems, and is widely used in a variety of fields where accurate data are available. While the assumptions…

神经元与认知 · 定量生物学 2017-06-02 Ulisse Ferrari , Tomoyuki Obuchi , Thierry Mora

Entropic Dynamics is a framework in which dynamical laws are derived as an application of entropic methods of inference. No underlying action principle is postulated. Instead, the dynamics is driven by entropy subject to the constraints…

量子物理 · 物理学 2015-09-11 Ariel Caticha

A generic feature of systems with long-range interactions is the presence of {\it quasi-stationary} states with non-Gaussian single particle velocity distributions. For the case of the Hamiltonian Mean Field (HMF) model, we demonstrate that…

Fluctuations in biochemical networks, e.g., in a living cell, have a complex origin that precludes a description of such systems in terms of bipartite or multipartite processes, as is usually done in the framework of stochastic and/or…

统计力学 · 物理学 2020-01-29 R. Chétrite , M. L. Rosinberg , T. Sagawa , G. Tarjus

Sample-based trajectory optimisers are a promising tool for the control of robotics with non-differentiable dynamics and cost functions. Contemporary approaches derive from a restricted subclass of stochastic optimal control where the…

机器人学 · 计算机科学 2021-10-07 Tom Lefebvre , Guillaume Crevecoeur

Statistical physics aims to describe properties of macroscale systems in terms of distributions of their microscale agents. Its central tool is the maximization of entropy, a variational principle. We review the history of this principle,…

统计力学 · 物理学 2023-10-11 Jonathan Asher Pachter , Ying-Jen Yang , Ken A. Dill

In this paper, we present a statistical model of spacetime trajectories based on a finite collection of paths organized into a branched manifold. For each configuration of the branched manifold, we define a Shannon entropy. Given the…

量子物理 · 物理学 2026-03-17 Roukaya Dekhil , Clifford Ellgen , Bruno Klajn