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The recent discovery of universal principles underlying many complex networks occurring across a wide range of length scales in the biological world has spurred physicists in trying to understand such features using techniques from…

生物物理 · 物理学 2015-05-13 Sitabhra Sinha

Recently, one paper in Nature(Papadopoulos, 2012) raised an old debate on the origin of the scale-free property of complex networks, which focuses on whether the scale-free property origins from the optimization or not. Because the…

社会与信息网络 · 计算机科学 2012-12-04 Bojin Zheng , Hongrun Wu , Jun Qin , Wenfei Lan , Wenhua Du

Networks describing the interaction of the elements that constitute a complex system grow and develop via a number of different mechanisms, such as the addition and deletion of nodes, the addition and deletion of edges, as well as the…

分子网络 · 定量生物学 2010-06-09 Arend Hintze , Christoph Adami

Ecological networks such as plant-pollinator systems and food webs vary in space and time. This variability includes fluctuations in global network properties such as total number and intensity of interactions but also in the local…

定量方法 · 定量生物学 2022-12-23 Tancredi Caruso , Giulio Virginio Clemente , Matthias C Rillig , Diego Garlaschelli

We investigate the selective forces that promote the emergence of modularity in nature. We demonstrate the spontaneous emergence of modularity in a population of individuals that evolve in a changing environment. We show that the level of…

分子网络 · 定量生物学 2009-11-13 Jiankui He , Jun Sun , Michael W. Deem

We study the relationship between the modularity of scale-free excitable networks and their ability to support self-sustained oscillation patterns. We find that the probability for a network of given degree-distribution exponent to be able…

物理与社会 · 物理学 2018-11-19 Jason Danison , Miguel Perez

Complex networks from such different fields as biology, technology or sociology share similar organization principles. The possibility of a unique growth mechanism promises to uncover universal origins of collective behaviour. In…

无序系统与神经网络 · 物理学 2009-09-29 Chaoming Song , Shlomo Havlin , Hernán A. Makse

It is widely believed that fractality of complex networks origins from hub repulsion behaviors (anticorrelation or disassortativity), which means large degree nodes tend to connect with small degree nodes. This hypothesis was demonstrated…

物理与社会 · 物理学 2013-11-14 Li Kuang , Bojin Zheng , Deyi Li , Yuanxiang Li , Yu Sun

The ubiquity of modules in biological networks may result from an evolutionary benefit of a modular organization. For instance, modularity may increase the rate of adaptive evolution, because modules can be easily combined into new…

分子网络 · 定量生物学 2011-08-26 Areejit Samal , Andreas Wagner , Olivier C. Martin

The fluctuation of dynamic variables in complex networks is known to depend on the dimension and the heterogeneity of the substrate networks. Previous studies, however, have reported inconsistent results for the scaling behavior of…

物理与社会 · 物理学 2018-04-11 H. -H. Yoo , D. -S. Lee

Scale-free networks are abundant in nature and society, describing such diverse systems as the world wide web, the web of human sexual contacts, or the chemical network of a cell. All models used to generate a scale-free topology are…

统计力学 · 物理学 2009-11-07 Albert-Laszlo Barabasi , Erzsebet Ravasz , Tamas Vicsek

Complex networks describe a wide range of systems in nature and society, much quoted examples including the cell, a network of chemicals linked by chemical reactions, or the Internet, a network of routers and computers connected by physical…

统计力学 · 物理学 2016-08-31 Reka Albert , Albert-Laszlo Barabasi

One of the most important features observed in real networks is that, as a network's topology evolves so does the network's ability to perform various complex tasks. To explain this, it has also been observed that as a network grows certain…

物理与社会 · 物理学 2017-12-06 L. A. Bunimovich , D. C. Smith , B. Z. Webb

Study of the cluster- or community structure of complex networks makes an important contribution to the understanding of networks at a functional level. Despite the many efforts, no definition of community has been agreed on and important…

无序系统与神经网络 · 物理学 2008-12-11 Joerg Reichardt , Stefan Bornholdt

Most complex networks serve as conduits for various dynamical processes, ranging from mass transfer by chemical reactions in the cell to packet transfer on the Internet. We collected data on the time dependent activity of five natural and…

无序系统与神经网络 · 物理学 2009-11-10 M. Argollo de Menezes , A-L. Barabasi

A generalization of modularity, called block modularity, is defined. This is a quality function which evaluates a label assignment against an arbitrary block pattern. Therefore, unlike standard modularity or its variants, arbitrary network…

物理与社会 · 物理学 2023-03-01 Rudy Arthur

Experimental results often do not assess network structure; rather, the network structure is inferred by the dynamics of the nodes. From the dynamics of the nodes one then constructs a network of functional relations, termed the functional…

适应与自组织系统 · 物理学 2017-11-22 Jake Stroud , Mauricio Barahona , Tiago Pereira

The relationship between network topology and system dynamics has significant implications for unifying our understanding of the interplay among metabolic, gene-regulatory, and ecosystem network architecures. Here we analyze the stability…

种群与进化 · 定量生物学 2015-06-17 Cameron Smith , Raymond S. Puzio , Aviv Bergman

Methods for learning Bayesian network structure can discover dependency structure between observed variables, and have been shown to be useful in many applications. However, in domains that involve a large number of variables, the space of…

机器学习 · 计算机科学 2012-12-12 Eran Segal , Dana Pe'er , Aviv Regev , Daphne Koller , Nir Friedman

Network science provides an indispensable theoretical framework for studying the structure and function of real complex systems. Different network models are often used for finding the rules that govern their evolution, whereby the correct…

物理与社会 · 物理学 2020-09-02 Ana Vranić , Marija Mitrović Dankulov