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Trees have long been used as a graphical representation of species relationships. However complex evolutionary events, such as genetic reassortments or hybrid speciations which occur commonly in viruses, bacteria and plants, do not fit into…

种群与进化 · 定量生物学 2017-07-24 Sebastien Roch , Kun-Chieh Wang

We establish maximal trees and graphs for the difference of average distance and proximity proving thus the corresponding conjecture posed in [4]. We also establish maximal trees for the difference of average eccentricity and remoteness and…

组合数学 · 数学 2020-10-22 Jelena Sedlar

It is an open question whether there exists a polynomial-time algorithm for computing the rotation distances between pairs of extended ordered binary trees. The problem of computing the rotation distance between an arbitrary pair of trees,…

数据结构与算法 · 计算机科学 2020-01-20 Sean Cleary , Roland Maio

Phylogenetic networks are a type of directed acyclic graph that represent how a set $X$ of present-day species are descended from a common ancestor by processes of speciation and reticulate evolution. In the absence of reticulate evolution,…

组合数学 · 数学 2017-08-11 Andrew Francis , Charles Semple , Mike Steel

The problem of predicting links in large networks is an important task in a variety of practical applications, including social sciences, biology and computer security. In this paper, statistical techniques for link prediction based on the…

应用统计 · 统计学 2021-09-01 Francesco Sanna Passino , Anna S. Bertiger , Joshua C. Neil , Nicholas A. Heard

In adaptive networks fragmentation transitions have been observed in which the network breaks into disconnected components. We present an analytical approach for calculating the transition point in general adaptive network models. Using the…

适应与自组织系统 · 物理学 2012-06-08 Gesa A. Böhme , Thilo Gross

We study the problem of minimizing a sum of convex objective functions where the components of the objective are available at different nodes of a network and nodes are allowed to only communicate with their neighbors. The use of…

最优化与控制 · 数学 2015-04-24 Aryan Mokhtari , Qing Ling , Alejandro Ribeiro

We consider a distributed estimation method in a setting with heterogeneous streams of correlated data distributed across nodes in a network. In the considered approach, linear models are estimated locally (i.e., with only local data)…

机器学习 · 计算机科学 2021-02-11 Lingzhou Hong , Alfredo Garcia , Ceyhun Eksin

Graph drawings are useful tools for exploring the structure and dynamics of data that can be represented by pair-wise relationships among a set of objects. Typical real-world social, biological or technological networks exhibit high…

社会与信息网络 · 计算机科学 2018-07-05 Christian Schulz

We consider a growing network, whose growth algorithm is based on the preferential attachment typical for scale-free constructions, but where the long-range bonds are disadvantaged. Thus, the probability to get connected to a site at…

统计力学 · 物理学 2009-11-07 R. Xulvi-Brunet , I. M. Sokolov

Recently a distributed algorithm has been proposed for multi-agent networks to solve a system of linear algebraic equations, by assuming each agent only knows part of the system and is able to communicate with nearest neighbors to update…

最优化与控制 · 数学 2016-03-15 Hong-Tai Cao , Travis E. Gibson , Shaoshuai Mou , Yang-Yu Liu

We consider soft random geometric graphs, constructed by distributing points (nodes) randomly according to a Poisson Point Process, and forming links between pairs of nodes with a probability that depends on their mutual distance, the…

无序系统与神经网络 · 物理学 2018-10-03 Carl P. Dettmann , Orestis Georgiou

This paper addresses the problem of finding a representation of a subtree distance, which is an extension of the tree metric. We show that a minimal representation is uniquely determined by a given subtree distance, and give a linear time…

数据结构与算法 · 计算机科学 2019-02-26 Takanori Maehara , Kazutoshi Ando

We present a framework to calculate the cascade size evolution for a large class of cascade models on random network ensembles in the limit of infinite network size. Our method is exact and applies to network ensembles with almost arbitrary…

物理与社会 · 物理学 2018-04-25 Rebekka Burkholz , Frank Schweitzer

Random walks are ubiquitous in the sciences, and they are interesting from both theoretical and practical perspectives. They are one of the most fundamental types of stochastic processes; can be used to model numerous phenomena, including…

物理与社会 · 物理学 2020-04-13 Naoki Masuda , Mason A. Porter , Renaud Lambiotte

Interaction networks, consisting of agents linked by their interactions, are ubiquitous across many disciplines of modern science. Many methods of analysis of interaction networks have been proposed, mainly concentrating on node degree…

分子网络 · 定量生物学 2011-12-20 Aleksandar Stojmirović , Yi-Kuo Yu

We study the role of finiteness and fluctuations about average quantities for basic structural properties of growing networks. We first determine the exact degree distribution of finite networks by generating function approaches. The…

统计力学 · 物理学 2009-11-07 P. L. Krapivsky , S. Redner

We introduce a new phenomenological one-scale model for the evolution of domain wall networks, and test it against high-resolution field theory numerical simulations. We argue that previous numerical estimates of wall velocities are…

高能物理 - 唯象学 · 物理学 2009-11-11 P. P. Avelino , C. J. A. P. Martins , J. C. R. E. Oliveira

The properties of randomly evolving special trees having defined and analyzed already in two earlier papers (arXiv:cond-mat/0205650 and arXiv:cond-mat/0211092) have been investigated in the case when the continuous time parameter converges…

统计力学 · 物理学 2007-05-23 L. Pal

The comprehensive characterization of the structure of complex networks is essential to understand the dynamical processes which guide their evolution. The discovery of the scale-free distribution and the small world property of real…

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