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Molecular motors are in charge of almost every process in the life cycle of cells, such as protein synthesis, DNA replication, and cell locomotion, hence being of crucial importance for understanding the cellular dynamics. However, given…

统计力学 · 物理学 2025-09-05 Adrián Nadal-Rosa , Gonzalo Manzano

We present a simple model for the bidirectional dynamics of actin bundles with alternating polarities in gliding assays with non-processive myosin motors. In the model, the bundle is represented as an elastic chain consisting of monomers…

软凝聚态物质 · 物理学 2015-05-19 Barak Gur , Oded Farago

Brownian particles interacting sequentially with distinct temperatures and driving forces at each stroke have been tackled as a reliable alternative for the construction of engine setups. However they can behave very inefficiently depending…

统计力学 · 物理学 2022-12-28 Iago N. Mamede , Angel L. L. Stable , C. E. Fiore

We propose a two-dimensional model for a complete description of the dynamics of molecular motors, including both the processive movement along track filaments and the dissociation from the filaments. The theoretical results on the…

生物大分子 · 定量生物学 2009-11-10 Ping Xie , Shuo-Xing Dou , Peng-Ye Wang

A colloidal particle embedded in a fluid can be used as a microscopic heat engine by means of a sequence of cyclic transformations imposed by an optical trap. We investigate a model for the operation of such kind of Brownian engines when…

软凝聚态物质 · 物理学 2021-03-30 Juan Ruben Gomez-Solano

Linear bio-molecular motors move unidirectionally along a track by coordinating several different processes, such as fuel (ATP) capture, hydrolysis, conformational changes, binding and unbinding from a track, and center-of-mass diffusion. A…

统计力学 · 物理学 2015-05-18 Nathan J. Kuwada , Gerhard A. Blab , Heiner Linke

The nonequilibrium activity taking place in a living cell can be monitored with a tracer embedded in the medium. While microrheology experiments based on optical manipulation of such probes have become increasingly standard, we put forward…

软凝聚态物质 · 物理学 2014-10-31 Étienne Fodor , Kiyoshi Kanazawa , Hisao Hayakawa , Paolo Visco , Frédéric van Wijland

In this paper we provide a comprehensive analysis of a structural model for the dynamics of prices of assets traded in a market originally proposed in [1]. The model takes the form of an interacting generalization of the geometric Brownian…

统计金融 · 定量金融 2018-06-06 Kartik Anand , Jonathan Khedair , Reimer Kuehn

Three problems in the statistical mechanics of models for an assembly of molecular motors interacting with cytoskeletal filaments are reviewed. First, a description of the hydrodynamical behaviour of density-density correlations in…

统计力学 · 物理学 2009-11-11 Gautam I. Menon

We study the influence of the lattice topography and the coupling between motion in different directions, for a three-dimensional Brownian motor based on cold atoms in a double optical lattice. Due to controllable relative spatial phases…

原子物理 · 物理学 2008-01-23 H. Hagman , C. M. Dion , P. Sjolund , S. J. H. Petra , A. Kastberg

We show how to switch on and off the ratchet potential of a collective Brownian motor, depending only on the position of the particles, in order to attain a current higher than or at least equal to that induced by any periodic flashing.…

统计力学 · 物理学 2007-09-19 L. Dinis , J. M. R. Parrondo , F. J. Cao

A simple flashing ratchet model in two dimensions is proposed to simulate the hand-over-hand motion of two head molecular motors like kinesin. Extensive Langevin simulations of the model are performed. Good qualitative agreement with the…

生物物理 · 物理学 2008-03-18 Javier Munarriz , Juan J. Mazo , Fernando Falo

Current understanding of how contractility emerges in disordered actomyosin networks of non-muscle cells is still largely based on the intuition derived from earlier works on muscle contractility. This view, however, largely overlooks the…

生物物理 · 物理学 2018-04-11 James E. Komianos , Garegin A. Papoian

Recently individual two-headed kinesin molecules have been studied in in vitro motility assays revealing a number of their peculiar transport properties. In this paper we propose a simple and robust model for the kinesin stepping process…

统计力学 · 物理学 2009-10-31 Imre Derenyi , Tamas Vicsek

A homologous series of two-station [2]rotaxanes incorporating amino-acid units in the molecular thread has been developed. The degenerate [2]rotaxanes exhibit amino-acid specific shuttling rates between two fumaric stations related to the…

Lipkin-Meshkov-Glick model of two anisotropically interacting spins in a magnetic field is proposed as a working substance of a quantum Otto engine to explore and exploit the anisotropy effects for the optimization of engine operation.…

量子物理 · 物理学 2016-08-30 Selçuk Çakmak , Ferdi Altintas , Özgür E. Müstecaplıoğlu

We discuss an autonomous motor based on a Brownian particle driven from thermal equilibrium by periodic in time variation of the internal potential through which the particle interacts with molecules of the surrounding thermal bath. We…

统计力学 · 物理学 2015-06-23 A. V. Plyukhin

Regulation of contraction in striated muscle is controlled by a dual mechanism involving both thin filaments containing actin and thick filaments containing myosin. The thin filament is activated by calcium ions binding to troponin, leading…

We model an overdamped Brownian particle that is subject to resetting facilitated by a ratchet potential on a spatially periodic domain. This asymmetric potential switches on with a constant rate, but switches off again only upon the…

统计力学 · 物理学 2024-07-25 Connor Roberts , Emir Sezik , Eloise Lardet

Closed-loop or feedback controlled ratchets are Brownian motors that operate using information about the state of the system. For these ratchets, we compute the power output and we investigate its relation with the information used in the…

统计力学 · 物理学 2007-11-05 M. Feito , F. J. Cao