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The properties of semiflexible polymers tethered by one end to an impenetrable wall and exposed to oscillatory shear flow are investigated by mesoscale simulations. A polymer, confined in two dimensions, is described by a linear bead-spring…

软凝聚态物质 · 物理学 2021-12-14 Antonio Lamura , Roland G. Winkler , Gerhard Gompper

In this Thesis we first show how the shape of the Peierls barrier and its dependence on the applied loading can be extracted from the data obtained in atomistic studies at 0 K. We consider the Peierls barrier as a two-dimensional periodic…

材料科学 · 物理学 2007-07-25 Roman Gröger

By means of molecular dynamics simulations, we study the stationary points of the potential energy in a Lennard-Jones liquid, giving a purely geometric characterization of the energy landscape of the system. We find a linear relation…

We investigate the nonequilibrium dynamics of semiflexible polymers driven by motor proteins (MPs) in two-dimensional motility assays under harmonic confinement. Using a coarse-grained agent-based model that incorporates stochastic motor…

软凝聚态物质 · 物理学 2025-09-09 Sandip Roy , Abhishek Chaudhuri , Anil Kumar Dasanna

We consider the impact of the elastomer network on the structure and fluctuations in the isotropic-genesis nematic elastomer, via a phenomenological model that underscores the role of network compliance. The model contains a…

软凝聚态物质 · 物理学 2015-06-04 Bing-Sui Lu , Fangfu Ye , Xiangjun Xing , Paul M. Goldbart

Molecular dynamics simulations are increasingly being used to investigate the structural evolution of polymers during mechanical deformation, but relatively few studies focus on the influence of boundary conditions on this evolution, in…

材料科学 · 物理学 2013-10-03 M. A. Tschopp , J. L. Bouvard , D. K. Ward , D. J. Bammann , M. F. Horstemeyer

The presence of one or more species at some spatial locations but not others is a central matter in ecology. This phenomenon is related to ecological pattern formation. Nonlocal interactions can be considered as one of the mechanisms…

种群与进化 · 定量生物学 2017-12-29 Ozgur Aydogmus

Two ring polymers close to each other in space may be either in a segregated phase if there is a strong repulsion between monomers in the polymers, or intermingle in a mixed phase if there is a strong attractive force between the monomers.…

软凝聚态物质 · 物理学 2022-11-23 EJ Janse van Rensburg , E Orlandini , MC Tesi , SG Whittington

Low-connectivity polymer networks were recently found to behave auxetically when subjected to small tensions, that is, their Poisson's ratio $\nu$ becomes negative. In addition, for specific state points, numerical simulations revealed that…

软凝聚态物质 · 物理学 2024-01-30 Andrea Ninarello , José Ruiz-Franco , Emanuela Zaccarelli

We present a numerical Monte Carlo analysis of a continuos spin Ising chain that can describe the statistical proterties of folded proteins. We find that depending on the value of the Metropolis temperature, the model displays the three…

统计力学 · 物理学 2011-02-01 M. N. Chernodub , Martin Lundgren , Antti J. Niemi

Motivated by results from an earlier Brownian Dynamics (BD) simulation for the collapse of a single, stiff polymer in a poor solvent [B. Schnurr, F. C. MacKintosh, and D. R. M. Williams, Europhys. Lett. 51 (3), 279 (2000)] we calculate the…

软凝聚态物质 · 物理学 2009-11-07 B. Schnurr , F. Gittes , F. C. MacKintosh

We generalize a recently investigated lattice model of semiflexible polymers formed under equilibrium polymerization in a solution and conduct a comprehensive investigation of its melting properties. The model is characterized by six…

凝聚态物理 · 物理学 2007-05-23 Sagar S. Rane , P. D. Gujrati

The statistical theory of flow stress, including yield strength, for polycrystalline materials under quasi-static plastic deformation suggested in [arxiv:1803.08247[cond-mat.mtr-sci], arxiv:1805.08623[cond-mat.mtr-sci]] is developed in the…

介观与纳米尺度物理 · 物理学 2019-09-10 Alexander A. Reshetnyak , Yurii P. Sharkeev

Initially straight slender elastic rods with geometrically constrained ends buckle and form stable two-dimensional shapes when compressed by bringing the ends together. It is also known that beyond a critical value of the pre-stress,…

斑图形成与孤子 · 物理学 2021-02-03 Soheil Fatehiboroujeni , Arvind Gopinath , Sachin Goyal

In granular media, the presence of even small amounts of interparticle cohesion manifests as an increase in the bulk strength and stiffness, effects that are typically associated with an increase in the average number of constraints per…

软凝聚态物质 · 物理学 2026-03-10 Abrar Naseer , Karen E. Daniels , Tejas G. Murthy

We introduce a mesoscopic model of dynamic Tetra-PEG hydrogel networks based on a hybrid Dissipative Particle Dynamics/Monte Carlo (DPD/MC) approach. Polymer chains are described by Finite Extensible Nonlinear Elastic (FENE) potential,…

软凝聚态物质 · 物理学 2026-03-23 Pietro Miotti , Lucien Cousin , Mark W. Tibbitt , Igor V. Pivkin

In this study, we consider a linearized compressible flow structure interaction PDE model for which the interaction interface is under the effect of material derivative term. While the linearization takes place around a constant pressure…

偏微分方程分析 · 数学 2021-02-09 Pelin Guven Geredeli

Against common sense, auxetic materials expand or contract perpendicularly when stretched or compressed, respectively, by uniaxial strain, being characterized by a negative Poisson's ratio $\nu$. The amount of deformation in response to the…

软凝聚态物质 · 物理学 2022-02-22 Andrea Ninarello , José Ruiz-Franco , Emanuela Zaccarelli

We present a new apparatus that probes simultaneously the macroscopic mechanical response and the microscopic motion in polymer networks under uni-axial strain. The setup leverages photon correlation imaging, a space- and time-resolved…

软凝聚态物质 · 物理学 2025-09-01 N. H. P. Orr , G. Prevot , T. Phou , L. Cipelletti

Mono- and poly-disperse melts of oligomers (average length 10 monomers) of trans-1,4-polyisoprene are simulated in full atomistic detail. The force-field is developed by means of a mixture of ab initio quantum-chemistry and an automatic…

软凝聚态物质 · 物理学 2009-10-31 Roland Faller , Florian Mueller-Plathe , Manolis Doxastakis , Doros Theodorou