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Thermodynamic constraints on reactions directions are inherent in the structure of a given biochemical network. However, concrete procedures for determining feasible reaction directions for large-scale metabolic networks are not well…

分子网络 · 定量生物学 2007-05-23 Feng Yang , Feng Qi , Daniel A. Beard

A generalized self-consistent field approach for polymer networks with fixed topology is developed. It is shown that the theory reproduces the localization of crosslinks which is characteristic for gels. The theory is then used to study the…

软凝聚态物质 · 物理学 2015-06-17 Friederike Schmid

We consider a propagation of transition fronts in one-dimensional chains with bi-stable nondegenerate on-site potential. If one adopts linear coupling in the chain and piecewise linear on-site force, then it is possible to develop…

斑图形成与孤子 · 物理学 2017-05-24 I. B. Shiroky , O. V. Gendelman

The force networks of different granular ensembles are defined and their topological properties studied using the tools of complex networks. In particular, for each set of grains compressed in a square box, it is introduced a force…

无序系统与神经网络 · 物理学 2007-09-18 Roberto Arevalo , Iker Zuriguel , Diego Maza

Dynamical processes on networks are currently being considered in different domains of cross-disciplinary interest. Reaction-diffusion systems hosted on directed graphs are in particular relevant for their widespread applications, from…

统计力学 · 物理学 2016-04-06 Silvia Contemori , Francesca Di Patti , Duccio Fanelli , Filippo Miele

Entangled granular systems exhibit mechanical rigidity and resistance to deformation, reminiscent of cohesive materials, due to their reduced degrees of freedom and contact friction. A quantitative understanding of how classical granular…

软凝聚态物质 · 物理学 2026-02-11 Palash Sarate , Mohd. Ilyas Bhat , Tejas G. Murthy , Prerna Sharma

During the last decade, network approaches became a powerful tool to describe protein structure and dynamics. Here we review the links between disordered proteins and the associated networks, and describe the consequences of local,…

Stress-strain curves, or more generally, stress functions, are an extremely important characterization of a material's mechanical properties. However, stress functions are often difficult to derive and are narrowly tailored to a specific…

材料科学 · 物理学 2023-12-21 Garrett Blum , Ryan Doris , Diego Klabjan , Horacio Espinosa , Ron Szalkowski

The linear response of a dynamical system refers to changes to properties of the system when small external perturbations are applied. We consider the little-studied question of selecting an optimal perturbation so as to (i) maximise the…

动力系统 · 数学 2018-04-04 Fadi Antown , Davor Dragičević , Gary Froyland

We study the geometry of forces in some simple models for granular stackings. The information contained in geometry is complementary to that in the distribution of forces in a single inter-particle contact, which is more widely studied. We…

统计力学 · 物理学 2007-05-23 Srdjan Ostojic , Bernard Nienhuis

We present a systematic investigation of the distribution of normal forces at the boundaries of static packings of spheres. A new method for the efficient construction of large hexagonal-close-packed crystals is introduced and used to study…

软凝聚态物质 · 物理学 2009-10-31 Daniel L. Blair , Nathan W. Mueggenburg , Adam H. Marshall , Heinrich M. Jaeger , Sidney R. Nagel

Highly concentrated or 'dense" particle suspensions can undergo a sharp increase in viscosity, or shear thickening, under applies stress. Understanding the fundamental features leading to such rheological changes in dense suspensions is…

The series of equilibrium states reached by disordered packings of rigid, frictionless discs in two dimensions, under gradually varying stress, are studied by numerical simulations. Statistical properties of trajectories in configuration…

软凝聚态物质 · 物理学 2009-10-31 Gael Combe , Jean-Noel Roux

This paper (parts I and II) provides an expository introduction to monotone and near-monotone dynamical systems associated to biochemical networks, those whose graphs are consistent or near-consistent. Many conclusions can be drawn from…

分子网络 · 定量生物学 2007-05-23 Eduardo D. Sontag

For thin networked materials, which are spatial discrete structures constructed by continuum components, a paradox on the effective thickness defined by the in-plane and out-of-plane stiffnesses is found, i.e. the effective thickness is not…

应用物理 · 物理学 2021-06-30 Fei Pan , Feng Zhang , Yuli Chen , Zhi Liu , Xiaoling Zheng , Bin Liu

We introduce novel sets of measures with the goal of describing dynamical properties of force networks in dense particulate systems. The presented approach is based on persistent homology and allows for extracting precise, quantitative…

数据分析、统计与概率 · 物理学 2015-06-19 Miroslav Kramar , Arnaud Goullet , Lou Kondic , Konstantin Mischaikow

Many objects of nanoscopic dimensions involve fluid-tethered chain interfaces. These systems are of interest for basic science and for several applications, in particular for design of nanodevices for specific purposes. We review recent…

软凝聚态物质 · 物理学 2014-03-07 S. Sokołowski , J. Ilnytskyi , O. Pizio

This study investigates computationally the impact of particle size disparity and cohesion on force chain formation in granular media. The granular media considered in this study are bi-disperse systems under uniaxial compression,…

软凝聚态物质 · 物理学 2025-03-06 Ankit Shrivastava , Kaushik Dayal , Hae Young Noh

The stress response of a granular assembly subject to different changes of boundary conditions is studied experimentally in order to define the stress propagation characteristics. These results demonstrate that no simple and single…

软凝聚态物质 · 物理学 2007-05-23 P. Evesque

This paper (parts I and II) provides an expository introduction to monotone and near-monotone dynamical systems associated to biochemical networks, those whose graphs are consistent or near-consistent. Many conclusions can be drawn from…

分子网络 · 定量生物学 2007-05-23 Eduardo D. Sontag