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相关论文: Generating Physically Consistent Molecules with En…

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Physical systems that naturally perform energy descent offer a direct route to accelerating machine learning. Oscillator Ising Machines (OIMs) exemplify this idea: their GHz-frequency dynamics mirror both the optimization of energy-based…

机器学习 · 计算机科学 2025-11-18 Alex Gower

This work presents strategies to learn an Energy-Based Model (EBM) according to the desired length of its MCMC sampling trajectories. MCMC trajectories of different lengths correspond to models with different purposes. Our experiments cover…

机器学习 · 统计学 2022-05-25 Mitch Hill , Jonathan Mitchell , Chu Chen , Yuan Du , Mubarak Shah , Song-Chun Zhu

Purpose: Although recent deep energy-based generative models (EBMs) have shown encouraging results in many image generation tasks, how to take advantage of the self-adversarial cogitation in deep EBMs to boost the performance of Magnetic…

图像与视频处理 · 电气工程与系统科学 2021-09-10 Yu Guan , Zongjiang Tu , Shanshan Wang , Qiegen Liu , Yuhao Wang , Dong Liang

We introduce Efficient Motion Diffusion Model (EMDM) for fast and high-quality human motion generation. Current state-of-the-art generative diffusion models have produced impressive results but struggle to achieve fast generation without…

计算机视觉与模式识别 · 计算机科学 2024-11-26 Wenyang Zhou , Zhiyang Dou , Zeyu Cao , Zhouyingcheng Liao , Jingbo Wang , Wenjia Wang , Yuan Liu , Taku Komura , Wenping Wang , Lingjie Liu

Multimodal generative models have recently gained significant attention for their ability to learn representations across various modalities, enhancing joint and cross-generation coherence. However, most existing works use standard Gaussian…

机器学习 · 计算机科学 2024-10-01 Shiyu Yuan , Jiali Cui , Hanao Li , Tian Han

The generation of equilibrium samples of molecular systems has been a long-standing problem in statistical physics. Boltzmann Generators are a generative machine learning method that addresses this issue by learning a transformation via a…

机器学习 · 统计学 2025-02-04 Leon Klein , Frank Noé

Toward the goal of using Scientific Machine Learning (SciML) emulators to improve the numerical representation of aerosol processes in global atmospheric models, we explore the emulation of aerosol microphysics processes under cloud-free…

Energy-Based Models (EBMs) offer a versatile framework for modeling complex data distributions. However, training and sampling from EBMs continue to pose significant challenges. The widely-used Denoising Score Matching (DSM) method for…

机器学习 · 统计学 2024-03-20 Mingtian Zhang , Alex Hawkins-Hooker , Brooks Paige , David Barber

Deep generative models that produce novel molecular structures have the potential to facilitate chemical discovery. Flow matching is a recently proposed generative modeling framework that has achieved impressive performance on a variety of…

机器学习 · 计算机科学 2024-11-26 Ian Dunn , David R. Koes

Amorphous molecular solids offer a promising alternative to inorganic semiconductors, owing to their mechanical flexibility and solution processability. The packing structure of these materials plays a crucial role in determining their…

Generating molecules that bind to specific proteins is an important but challenging task in drug discovery. Previous works usually generate atoms in an auto-regressive way, where element types and 3D coordinates of atoms are generated one…

生物大分子 · 定量生物学 2024-07-16 Haitao Lin , Yufei Huang , Odin Zhang , Siqi Ma , Meng Liu , Xuanjing Li , Lirong Wu , Jishui Wang , Tingjun Hou , Stan Z. Li

Geometric representation-conditioned molecule generation provides an effective paradigm that decouples molecule representation modeling from structure generation. By decoupling molecule generation into two stages-first generating a…

机器学习 · 计算机科学 2026-05-11 Shaoheng Yan , Zian Li , Cai Zhou , Qiaojing Huang , Kai Liu , Muhan Zhang

Deep generative models that produce novel molecular structures have the potential to facilitate chemical discovery. Diffusion models currently achieve state of the art performance for 3D molecule generation. In this work, we explore the use…

生物大分子 · 定量生物学 2024-05-01 Ian Dunn , David Ryan Koes

One of the predominant methods for training world models is autoregressive prediction in the output space of the next element of a sequence. In Natural Language Processing (NLP), this takes the form of Large Language Models (LLMs)…

机器学习 · 计算机科学 2024-06-14 Alexi Gladstone , Ganesh Nanduru , Md Mofijul Islam , Aman Chadha , Jundong Li , Tariq Iqbal

This paper studies a curious phenomenon in learning energy-based model (EBM) using MCMC. In each learning iteration, we generate synthesized examples by running a non-convergent, non-mixing, and non-persistent short-run MCMC toward the…

机器学习 · 统计学 2019-11-27 Erik Nijkamp , Mitch Hill , Song-Chun Zhu , Ying Nian Wu

The electron density of a molecule or material has recently received major attention as a target quantity of machine-learning models. A natural choice to construct a model that yields transferable and linear-scaling predictions is to…

化学物理 · 物理学 2022-06-29 Andrea Grisafi , Alan M. Lewis , Mariana Rossi , Michele Ceriotti

Unsupervised point cloud completion aims to infer the whole geometry of a partial object observation without requiring partial-complete correspondence. Differing from existing deterministic approaches, we advocate generative modeling based…

计算机视觉与模式识别 · 计算机科学 2022-11-15 Ruikai Cui , Shi Qiu , Saeed Anwar , Jing Zhang , Nick Barnes

Pretraining molecular representation models without labels is fundamental to various applications. Conventional methods mainly process 2D molecular graphs and focus solely on 2D tasks, making their pretrained models incapable of…

定量方法 · 定量生物学 2022-11-30 Rui Jiao , Jiaqi Han , Wenbing Huang , Yu Rong , Yang Liu

Coarse-grained (CG) models provide an effective route to reducing the complexity of molecular simulations (MD), but conventional approaches depend heavily on long all-atom MD trajectories to adequately sample configurational space. This…

化学物理 · 物理学 2025-10-28 Maximilian Stupp , P. S. Koutsourelakis

Free energy landscapes encode the kinetics, intermediates, and transition states that govern molecular processes and are thus a key target of single biomolecule research. Typical approaches to deriving optimal, error-minimizing,…

生物物理 · 物理学 2025-11-25 Oliver Cheng , Zosia Adamska , Michael P. Brenner , Megan C. Engel