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This study investigates the current landscape and future directions of protein foundation model research. While recent advancements have transformed protein science and engineering, the field lacks a comprehensive benchmark for fair…

生物大分子 · 定量生物学 2025-06-19 Zhangyang Gao , Hao Wang , Cheng Tan , Chenrui Xu , Mengdi Liu , Bozhen Hu , Linlin Chao , Xiaoming Zhang , Stan Z. Li

EpiLearn is a Python toolkit developed for modeling, simulating, and analyzing epidemic data. Although there exist several packages that also deal with epidemic modeling, they are often restricted to mechanistic models or traditional…

机器学习 · 计算机科学 2024-09-10 Zewen Liu , Yunxiao Li , Mingyang Wei , Guancheng Wan , Max S. Y. Lau , Wei Jin

Seasonal influenza epidemics cause consistent, considerable, widespread loss annually in terms of economic burden, morbidity, and mortality. With access to accurate and reliable forecasts of a current or upcoming influenza epidemic's…

种群与进化 · 定量生物学 2016-02-17 Logan C. Brooks , David C. Farrow , Sangwon Hyun , Ryan J. Tibshirani , Roni Rosenfeld

The transmission dynamics of an epidemic are rarely homogeneous. Super-spreading events and super-spreading individuals are two types of heterogeneous transmissibility. Inference of super-spreading is commonly carried out on secondary case…

定量方法 · 定量生物学 2025-01-23 Hannah Craddock , Simon EF Spencer , Xavier Didelot

Extreme precipitation events, such as violent rainfall and hail storms, routinely ravage economies and livelihoods around the developing world. Climate change further aggravates this issue. Data-driven deep learning approaches could widen…

WeatherBench is a benchmark dataset for medium-range weather forecasting of geopotential, temperature and precipitation, consisting of preprocessed data, predefined evaluation metrics and a number of baseline models. WeatherBench…

大气与海洋物理 · 物理学 2022-05-03 Sagar Garg , Stephan Rasp , Nils Thuerey

Tracking the spread of infectious disease during a pandemic has posed a great challenge to the governments and health sectors on a global scale. To facilitate informed public health decision-making, the concerned parties usually rely on…

统计方法学 · 统计学 2023-06-05 Tejasv Bedi , Yanxun Xu , Qiwei Li

Epidemic models often reflect characteristic features of infectious spreading processes by coupled non-linear differential equations considering different states of health (such as Susceptible, Infected, or Recovered). This compartmental…

物理与社会 · 物理学 2021-12-01 Vaiva Vasiliauskaite , Nino Antulov-Fantulin , Dirk Helbing

Over the past decade, U-Net has been the dominant architecture in medical image segmentation, leading to the development of thousands of U-shaped variants. Despite its widespread adoption, there is still no comprehensive benchmark to…

计算机视觉与模式识别 · 计算机科学 2025-10-09 Fenghe Tang , Chengqi Dong , Wenxin Ma , Zikang Xu , Heqin Zhu , Zihang Jiang , Rongsheng Wang , Yuhao Wang , Chenxu Wu , Shaohua Kevin Zhou

Accurate epidemic forecasting plays a vital role for governments in developing effective prevention measures for suppressing epidemics. Most of the present spatio-temporal models cannot provide a general framework for stable, and accurate…

机器学习 · 计算机科学 2023-06-23 Junkai Mao , Yuexing Han , Bing Wang

Endoscopic procedures are essential for diagnosing and treating internal diseases, and multi-modal large language models (MLLMs) are increasingly applied to assist in endoscopy analysis. However, current benchmarks are limited, as they…

计算机视觉与模式识别 · 计算机科学 2025-09-25 Shengyuan Liu , Boyun Zheng , Wenting Chen , Zhihao Peng , Zhenfei Yin , Jing Shao , Jiancong Hu , Yixuan Yuan

In the context of Epidemic Intelligence, many Event-Based Surveillance (EBS) systems have been proposed in the literature to promote the early identification and characterization of potential health threats from online sources of any…

信息检索 · 计算机科学 2023-03-31 Nejat Arinik , Roberto Interdonato , Mathieu Roche , Maguelonne Teisseire

Benchmarking involves designing scientific test methods, tools, and frameworks to quantitatively and comparably assess specific performance indicators of certain test subjects. With the development of artificial intelligence, AI…

软件工程 · 计算机科学 2023-11-28 Fenglin Bi , Fanyu Han , Shengyu Zhao , Jinlu Li , Yanbin Zhang , Wei Wang

Air-quality forecasting models are commonly evaluated on regional, preprocessed, and normalized datasets, where missing observations are removed or artificially completed. Such protocols simplify comparison but hide the conditions that…

人工智能 · 计算机科学 2026-05-08 Xing Xu , Xu Wang , Yudong Zhang , Huilin Zhao , Zhengyang Zhou , Yang Wang

As machine learning models grow increasingly competent, their predictions can supplement scarce or expensive data in various important domains. In support of this paradigm, algorithms have emerged to combine a small amount of high-fidelity…

机器学习 · 计算机科学 2025-07-08 Zhun Deng , Thomas P Zollo , Benjamin Eyre , Amogh Inamdar , David Madras , Richard Zemel

Event Sequences (EvS) refer to sequential data characterized by irregular sampling intervals and a mix of categorical and numerical features. Accurate classification of these sequences is crucial for various real-life applications,…

机器学习 · 计算机科学 2025-02-27 Dmitry Osin , Igor Udovichenko , Viktor Moskvoretskii , Egor Shvetsov , Evgeny Burnaev

Since the beginning of this century, the significant advancements in artificial intelligence and neural networks have offered the potential to bring new transformations to short-term earthquake prediction research. However, currently, there…

地球物理 · 物理学 2025-07-23 Zhiyu Xu , Qingliang Chen

Accurate epidemic forecasting is crucial for outbreak preparedness, but existing data-driven models are often brittle. Typically trained on a single pathogen, they struggle with data scarcity during new outbreaks and fail under distribution…

机器学习 · 计算机科学 2026-02-25 Zewen Liu , Juntong Ni , Bohan Wang , Max S. Y. Lau , Wei Jin

The epidemiology has recently witnessed great advances based on computational models. Its scope and impact are getting wider thanks to the new data sources feeding analytical frameworks and models. Besides traditional variables considered…

计算机与社会 · 计算机科学 2023-11-13 David Pastor-Escuredo

Global ocean forecasting aims to predict key ocean variables such as temperature, salinity, and currents, which is essential for understanding and describing oceanic phenomena. In recent years, data-driven deep learning-based ocean forecast…

机器学习 · 计算机科学 2025-12-19 Haoming Jia , Yi Han , Xiang Wang , Huizan Wang , Wei Wu , Jianming Zheng , Peikun Xiao