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Topological data analysis (TDA) is a rising branch in modern applied mathematics. It extracts topological structures as features of a given space and uses these features to analyze digital data. Persistent homology, one of the central tools…

代数拓扑 · 数学 2025-05-26 Chuan-Shen Hu

For many important network types (e.g., sensor networks in complex harsh environments and social networks) physical coordinate systems (e.g., Cartesian), and physical distances (e.g., Euclidean), are either difficult to discern or…

社会与信息网络 · 计算机科学 2023-12-05 Anura P. Jayasumana , Randy Paffenroth , Gunjan Mahindre , Sridhar Ramasamy , Kelum Gajamannage

Compacting orthogonal drawings is a challenging task. Usually algorithms try to compute drawings with small area or edge length while preserving the underlying orthogonal shape. We present a one-dimensional compaction algorithm that alters…

数据结构与算法 · 计算机科学 2017-06-21 Michael Jünger , Petra Mutzel , Christiane Spisla

In many scenarios, especially biomedical applications, the correct delineation of complex fine-scaled structures such as neurons, tissues, and vessels is critical for downstream analysis. Despite the strong predictive power of deep learning…

计算机视觉与模式识别 · 计算机科学 2024-03-25 Xiaoling Hu

Neural networks encode inputs as high-dimensional vectors, known as representations, that capture how models process data by encoding task-relevant structure and semantics. Representation alignment refers to the degree to which different…

计算几何 · 计算机科学 2026-05-26 Xinyuan Yan , Rita Sevastjanova , Mennatallah El-Assady , Bei Wang

Algorithms for persistent homology and zigzag persistent homology are well-studied for persistence modules where homomorphisms are induced by inclusion maps. In this paper, we propose a practical algorithm for computing persistence under…

计算几何 · 计算机科学 2014-03-26 Tamal K. Dey , Fengtao Fan , Yusu Wang

Capturing the global topology of an image is essential for proposing an accurate segmentation of its domain. However, most of existing segmentation methods do not preserve the initial topology of the given input, which is detrimental for…

计算机视觉与模式识别 · 计算机科学 2022-08-19 Minh On Vu Ngoc , Yizi Chen , Nicolas Boutry , Jonathan Fabrizio , Clement Mallet

Topological features based on persistent homology capture high-order structural information so as to augment graph neural network methods. However, computing extended persistent homology summaries remains slow for large and dense graphs and…

机器学习 · 计算机科学 2022-11-16 Zuoyu Yan , Tengfei Ma , Liangcai Gao , Zhi Tang , Yusu Wang , Chao Chen

In artificial-intelligence-aided signal processing, existing deep learning models often exhibit a black-box structure, and their validity and comprehensibility remain elusive. The integration of topological methods, despite its relatively…

机器学习 · 计算机科学 2023-11-28 Pingyao Feng , Siheng Yi , Qingrui Qu , Zhiwang Yu , Yifei Zhu

The persistence diagram (PD) is an increasingly popular topological descriptor. By encoding the size and prominence of topological features at varying scales, the PD provides important geometric and topological information about a space.…

This paper presents an adaptive convolutional neural network (CNN) architecture that can automate diverse topology optimization (TO) problems having different underlying physics. The architecture uses the encoder-decoder networks with dense…

计算工程、金融与科学 · 计算机科学 2025-09-10 Khaish Singh Chadha , Prabhat Kumar

We propose a simple yet novel data augmentation method for general data modalities based on energy-based modeling and principles from information geometry. Unlike most existing learning-based data augmentation methods, which rely on…

机器学习 · 计算机科学 2026-01-28 Pingbang Hu , Mahito Sugiyama

The coarsest approximation of the structure of a complex network, such as the Internet, is a simple undirected unweighted graph. This approximation, however, loses too much detail. In reality, objects represented by vertices and edges in…

网络与互联网体系结构 · 计算机科学 2009-11-02 Xenofontas Dimitropoulos , Dmitri Krioukov , Amin Vahdat , George Riley

A central challenge in topological data analysis is the interpretation of barcodes. The classical algebraic-topological approach to interpreting homology classes is to build maps to spaces whose homology carries semantics we understand and…

代数拓扑 · 数学 2023-08-11 Iris H. R. Yoon , Robert Ghrist , Chad Giusti

Thousands of scanned historical topographic maps contain valuable information covering long periods of time, such as how the hydrography of a region has changed over time. Efficiently unlocking the information in these maps requires…

图像与视频处理 · 电气工程与系统科学 2021-12-14 Weiwei Duan , Yao-Yi Chiang , Stefan Leyk , Johannes H. Uhl , Craig A. Knoblock

Spatial transcriptomics studies are becoming increasingly large and commonplace, necessitating simultaneous analysis of a large number of spatially resolved variables. Correspondingly, a diverse range of methodologies have been proposed to…

定量方法 · 定量生物学 2025-09-09 James Boyle , Gregory Hamm , Eleanor Williams , Robin JG Hartman , Magnus Soderburg , Ian Henry , Michael Casey

We propose a method to reconstruct and cluster incomplete high-dimensional data lying in a union of low-dimensional subspaces. Exploring the sparse representation model, we jointly estimate the missing data while imposing the intrinsic…

计算机视觉与模式识别 · 计算机科学 2017-09-06 João Carvalho , Manuel Marques , João P. Costeira

This paper is first-line research expanding GANs into graph topology analysis. By leveraging the hierarchical connectivity structure of a graph, we have demonstrated that generative adversarial networks (GANs) can successfully capture…

机器学习 · 计算机科学 2017-07-20 Weiyi Liu , Pin-Yu Chen , Hal Cooper , Min Hwan Oh , Sailung Yeung , Toyotaro Suzumura

Segmentation is often an essential intermediate step in image analysis. A volume segmentation characterizes the underlying volume image in terms of geometric information--segments, faces between segments, curves in which several faces…

计算几何 · 计算机科学 2010-10-01 Bjoern Andres , Ullrich Koethe , Thorben Kroeger , Fred A. Hamprecht

In enterprise datasets, documents are rarely pure. They are not just text, nor just numbers; they are a complex amalgam of narrative and structure. Current Retrieval-Augmented Generation (RAG) systems have attempted to address this…

人工智能 · 计算机科学 2026-01-16 Alex Dantart , Marco Kóvacs-Navarro