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We propose a stochastic model for intracellular transport processes associated with the activity of molecular motors. This out-of-equilibrium model, based on a generalized Langevin equation, considers a particle immersed in a viscoelastic…

生物物理 · 物理学 2009-04-15 L. Bruno , M. A. Despósito

Molecular communication (MC) can enable the transfer of information between nanomachines using molecules as the information carrier. In MC systems, multiple receiver nanomachines often co-exist in the same communication channel to serve…

信息论 · 计算机科学 2022-12-07 Nithin V. Sabu , Abhishek K. Gupta , Neeraj Varshney , Anshuman Jindal

This survey paper focuses on modulation aspects of molecular communication, an emerging field focused on building biologically-inspired systems that embed data within chemical signals. The primary challenges in designing these systems are…

新兴技术 · 计算机科学 2020-12-29 Mehmet Sukru Kuran , H. Birkan Yilmaz , Ilker Demirkol , Nariman Farsad , Andrea Goldsmith

Finite stochastic Markov models play a major role for modelling biochemical pathways. Such models are a coarse-grained description of the underlying microscopic dynamics and can be considered mesoscopic. The level of coarse-graining is to a…

生物物理 · 物理学 2012-06-05 Bernhard Altaner , Jürgen Vollmer

Many ion channels spontaneously switch between different levels of activity. Although this behaviour known as modal gating has been observed for a long time it is currently not well understood. Despite the fact that appropriately…

定量方法 · 定量生物学 2018-08-14 Ivo Siekmann , Mark Fackrell , Edmund J. Crampin , Peter Taylor

We present the detailed analysis of the diffusive transport of spatially inhomogeneous fluid mixtures and the interplay between structural and dynamical properties varying on the atomic scale. The present treatment is based on different…

介观与纳米尺度物理 · 物理学 2011-05-19 Umberto Marini Bettolo Marconi , Simone Melchionna

We develop the first exact Bayesian methodology for the problem of inference in discretely observed regime switching diffusions. Switching diffusion models extend ordinary diffusions by allowing for jumps in instantaneous drift and…

Airborne pathogen transmission mechanisms play a key role in the spread of infectious diseases such as COVID-19. In this work, we propose a computational fluid dynamics (CFD) approach to model and statistically characterize airborne…

流体动力学 · 物理学 2023-11-07 Fatih Gulec , Falko Dressler , Andrew W. Eckford

Spatial gradients of diffusible signalling molecules play crucial roles in controlling diverse cellular behaviour such as cell differentiation, tissue patterning and chemotaxis. In this paper, we report the design and testing of a…

定量方法 · 定量生物学 2016-12-15 Yasushi Saka , Murray MacPherson , Claudiu V. Giuraniuc

We provide the first complete continuous time framework for denoising diffusion models of discrete data. This is achieved by formulating the forward noising process and corresponding reverse time generative process as Continuous Time Markov…

In this paper, a cooperative diffusion-based molecular communication system is considered where distributed receivers collaboratively determine a transmitter's signal. In this system, the receivers first make local hard decisions about the…

信息论 · 计算机科学 2017-03-20 Yuting Fang , Adam Noel , Nan Yang , Andrew W. Eckford , Rodney A. Kennedy

Traditional molecular communications via diffusion (MCvD) systems have used baseband modulation techniques by varying properties of molecular pulses such as the amplitude, the frequency of the transversal wave of the pulse, and the time…

新兴技术 · 计算机科学 2016-11-17 Weisi Guo , Bin Li , Siyi Wang , Wei Liu

Due to network operation and maintenance relying heavily on network traffic monitoring, traffic matrix analysis has been one of the most crucial issues for network management related tasks. However, it is challenging to reliably obtain the…

网络与互联网体系结构 · 计算机科学 2024-12-02 Xinyu Yuan , Yan Qiao , Zhenchun Wei , Zeyu Zhang , Minyue Li , Pei Zhao , Rongyao Hu , Wenjing Li

We propose a novel method for simulating conditioned diffusion processes (diffusion bridges) in Euclidean spaces. By training a neural network to approximate bridge dynamics, our approach eliminates the need for computationally intensive…

机器学习 · 统计学 2025-06-23 Gefan Yang , Frank van der Meulen , Stefan Sommer

A hydrogeological model for the spread of pollution in an aquifer is considered. The model consists in a convection-diffusion-reaction equation involving the dispersion tensor which depends nonlinearly of the fluid velocity. We introduce an…

数值分析 · 数学 2020-06-05 Éloïse Comte

Molecular Communication (MC) is an important nanoscale communication paradigm, which is employed for the interconnection of the nanomachines (NMs) to form nanonetworks. A transmitter NM (TN) sends the information symbols by emitting…

信号处理 · 电气工程与系统科学 2020-03-27 Baris Atakan , Fatih Gulec

Focusing on stochastic systems arising in mean-field models, the systems under consideration belong to the class of switching diffusions, in which continuous dynamics and discrete events coexist and interact. The discrete events are modeled…

概率论 · 数学 2019-01-18 Son L. Nguyen , George Yin , Tuan A. Hoang

The aim of this work is to propose a provably convergent finite volume scheme for the so-called Stefan-Maxwell model, which describes the evolution of the composition of a multi-component mixture and reads as a cross-diffusion system. The…

数值分析 · 数学 2020-07-21 Clément Cancès , Virginie Ehrlacher , Laurent Monasse

The Markov chain approximation of a one-dimensional symmetric diffusion is investigated in this paper. Given an irreducible reflecting diffusion on a closed interval with scale function $s$ and speed measure $m$, the approximating Markov…

概率论 · 数学 2020-04-16 Xiaodan Li , Jiangang Ying

A discrete time stochastic model for a multiagent system given in terms of a large collection of interacting Markov chains is studied. The evolution of the interacting particles is described through a time inhomogeneous transition…

概率论 · 数学 2011-06-17 Amarjit Budhiraja , Pierre Del Moral , Sylvain Rubenthaler