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Using different sources of information to support automated extracting of relations between biomedical concepts contributes to the development of our understanding of biological systems. The primary comprehensive source of these relations…

计算与语言 · 计算机科学 2020-09-21 Diana Sousa , Andre Lamurias , Francisco M. Couto

In this paper, we investigate how semantic relations between concepts extracted from medical documents can be employed to improve the retrieval of medical literature. Semantic relations explicitly represent relatedness between concepts and…

信息检索 · 计算机科学 2019-05-06 Maristella Agosti , Giorgio Maria Di Nunzio , Stefano Marchesin , Gianmaria Silvello

Medication Extraction and Mining play an important role in healthcare NLP research due to its practical applications in hospital settings, such as their mapping into standard clinical knowledge bases (SNOMED-CT, BNF, etc.). In this work, we…

计算与语言 · 计算机科学 2024-12-31 Pablo Romero , Lifeng Han , Goran Nenadic

Objective: Medical relations are the core components of medical knowledge graphs that are needed for healthcare artificial intelligence. However, the requirement of expert annotation by conventional algorithm development processes creates a…

机器学习 · 计算机科学 2020-09-09 Yucong Lin , Keming Lu , Yulin Chen , Chuan Hong , Sheng Yu

Relation Extraction (RE) aims to label relations between groups of marked entities in raw text. Most current RE models learn context-aware representations of the target entities that are then used to establish relation between them. This…

计算与语言 · 计算机科学 2019-02-26 Gaurav Singh , Parminder Bhatia

Objective: To develop a high-throughput biomedical relation extraction system that takes advantage of the large language models'(LLMs) reading comprehension ability and biomedical world knowledge in a scalable and evidential manner.…

计算与语言 · 计算机科学 2024-03-27 Songchi Zhou , Sheng Yu

Relation Extraction is an important task in Information Extraction which deals with identifying semantic relations between entity mentions. Traditionally, relation extraction is carried out after entity extraction in a "pipeline" fashion,…

计算与语言 · 计算机科学 2021-03-11 Sachin Pawar , Pushpak Bhattacharyya , Girish K. Palshikar

Traditional biomedical version of embeddings obtained from pre-trained language models have recently shown state-of-the-art results for relation extraction (RE) tasks in the medical domain. In this paper, we explore how to incorporate…

计算与语言 · 计算机科学 2020-12-23 Ishani Mondal

For Relation Extraction (RE), the manual annotation of training data may be prohibitively expensive, since the sentences that contain the target relations in texts can be very scarce and difficult to find. It is therefore beneficial to…

计算与语言 · 计算机科学 2025-09-11 Zexuan Li , Hongliang Dai , Piji Li

Relation extraction is a Natural Language Processing task that aims to extract relationships from textual data. It is a critical step for information extraction. Due to its wide-scale applicability, research in relation extraction has…

计算与语言 · 计算机科学 2024-11-27 Anushka Swarup , Avanti Bhandarkar , Olivia P. Dizon-Paradis , Ronald Wilson , Damon L. Woodard

This comprehensive survey delves into the latest advancements in Relation Extraction (RE), a pivotal task in natural language processing essential for applications across biomedical, financial, and legal sectors. This study highlights the…

计算与语言 · 计算机科学 2025-07-03 Jose A. Diaz-Garcia , Julio Amador Diaz Lopez

Relation Extraction (RE) serves as a crucial technology for transforming unstructured text into structured information, especially within the framework of Knowledge Graph development. Its importance is emphasized by its essential role in…

计算与语言 · 计算机科学 2024-06-27 Dawulie Jinensibieke , Mieradilijiang Maimaiti , Wentao Xiao , Yuanhang Zheng , Xiaobo Wang

Automatically extracting the relationships between chemicals and diseases is significantly important to various areas of biomedical research and health care. Biomedical experts have built many large-scale knowledge bases (KBs) to advance…

计算与语言 · 计算机科学 2019-12-24 Huiwei Zhou , Yunlong Yang , Shixian Ning , Zhuang Liu , Chengkun Lang , Yingyu Lin , Degen Huang

Medical Relation Extraction (MRE) task aims to extract relations between entities in medical texts. Traditional relation extraction methods achieve impressive success by exploring the syntactic information, e.g., dependency tree. However,…

计算与语言 · 计算机科学 2022-08-30 Yifan Jin , Jiangmeng Li , Zheng Lian , Chengbo Jiao , Xiaohui Hu

Relation extraction (RE) seeks to detect and classify semantic relationships between entities, which provides useful information for many NLP applications. Since the state-of-the-art RE models require large amounts of manually annotated…

计算与语言 · 计算机科学 2019-11-13 Jian Ni , Radu Florian

Relation extraction (RE) aims at extracting the relation between two entities from the text corpora. It is a crucial task for Knowledge Graph (KG) construction. Most existing methods predict the relation between an entity pair by learning…

计算与语言 · 计算机科学 2020-11-30 Jun Kuang , Yixin Cao , Jianbing Zheng , Xiangnan He , Ming Gao , Aoying Zhou

Document-level relation extraction (DocRE) is a task that focuses on identifying relations between entities within a document. However, existing DocRE models often overlook the correlation between relations and lack a quantitative analysis…

信息检索 · 计算机科学 2023-10-23 Yusheng Huang , Zhouhan Lin

Combination therapies have become the standard of care for diseases such as cancer, tuberculosis, malaria and HIV. However, the combinatorial set of available multi-drug treatments creates a challenge in identifying effective combination…

Relation extraction (RE) involves identifying the relations between entities from underlying content. RE serves as the foundation for many natural language processing (NLP) and information retrieval applications, such as knowledge graph…

计算与语言 · 计算机科学 2024-06-25 Xiaoyan Zhao , Yang Deng , Min Yang , Lingzhi Wang , Rui Zhang , Hong Cheng , Wai Lam , Ying Shen , Ruifeng Xu

Drug discovery is a critical task in biomedical natural language processing (NLP), yet explainable drug discovery remains underexplored. Meanwhile, large language models (LLMs) have shown remarkable abilities in natural language…

计算与语言 · 计算机科学 2025-02-28 Kai Zhang , Rui Zhu , Shutian Ma , Jingwei Xiong , Yejin Kim , Fabricio Murai , Xiaozhong Liu