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In data clustering, it is often desirable to find not just a single partition into clusters but a sequence of partitions that describes the data at different scales (or levels of coarseness). A natural problem then is to analyse and compare…

代数拓扑 · 数学 2025-04-25 Juni Schindler , Mauricio Barahona

Techniques from computational topology, in particular persistent homology, are becoming increasingly relevant for data analysis. Their stable metrics permit the use of many distance-based data analysis methods, such as multidimensional…

代数拓扑 · 数学 2021-01-20 Bastian Rieck , Filip Sadlo , Heike Leitte

A fundamental tool in topological data analysis is persistent homology, which allows extraction of information from complex datasets in a robust way. Persistent homology assigns a module over a principal ideal domain to a one-parameter…

代数拓扑 · 数学 2019-06-19 Heather A. Harrington , Nina Otter , Hal Schenck , Ulrike Tillmann

We propose a topological framework for the detection of Hopf bifurcations directly from time series, based on persistent homology applied to phase space reconstructions via Takens embedding within the framework of Topological Data Analysis.…

动力系统 · 数学 2026-03-31 Jhonathan Barrios , Yásser Echávez , Carlos F. Álvarez

We propose a study of multipartite entanglement through persistent homology, a tool used in topological data analysis. In persistent homology, a 1-parameter filtration of simplicial complexes called persistence complex is used to reveal…

量子物理 · 物理学 2024-06-05 Gregory A. Hamilton , Felix Leditzky

Topological data analysis is an emerging field that applies the study of topological invariants to data. Perhaps the simplest of these invariants is the number of connected components or clusters. In this work, we explore a topological…

计算几何 · 计算机科学 2023-12-19 Ian Stewart Joyce , Grant Erdmann , Kirk P. Gardner , Ryan Kramer , Kyle Siegrist

Hierarchical clustering recursively partitions data at an increasingly finer granularity. In real-world applications, multi-view data have become increasingly important. This raises a less investigated problem, i.e., multi-view hierarchical…

机器学习 · 计算机科学 2022-05-06 Fangfei Lin , Bing Bai , Kun Bai , Yazhou Ren , Peng Zhao , Zenglin Xu

We introduce CoHiRF (Consensus Hierarchical Random Features), a hierarchical consensus framework that enables existing clustering methods to operate beyond their usual computational and memory limits. CoHiRF is a meta-algorithm that…

机器学习 · 计算机科学 2026-02-10 Katia Meziani , Bruno Belucci , Karim Lounici , Vladimir R. Kostic

Persistent homology, an algebraic method for discerning structure in abstract data, relies on the construction of a sequence of nested topological spaces known as a filtration. Two-parameter persistent homology allows the analysis of data…

计算几何 · 计算机科学 2022-07-08 Anway De , Thong Vo , Matthew Wright

Persistent homology encodes the evolution of homological features of a multifiltered cell complex in the form of a multigraded module over a polynomial ring, called a multiparameter persistence module, and quantifies it through invariants…

代数拓扑 · 数学 2026-03-24 Andrea Guidolin , Claudia Landi

Clustering is indispensable for data analysis in many scientific disciplines. Detecting clusters from heavy noise remains challenging, particularly for high-dimensional sparse data. Based on graph-theoretic framework, the present paper…

计算机视觉与模式识别 · 计算机科学 2014-07-08 Deli Zhao , Xiaoou Tang

Computational topologists recently developed a method, called persistent homology to analyze data presented in terms of similarity or dissimilarity. Indeed, persistent homology studies the evolution of topological features in terms of a…

定量方法 · 定量生物学 2017-08-01 Pavel Petrov , Stephen T Rush , Zhichun Zhai , Christine H Lee , Peter T Kim , Giseon Heo

Biclustering is an unsupervised machine-learning approach aiming to cluster rows and columns simultaneously in a data matrix. Several biclustering algorithms have been proposed for handling numeric datasets. However, real-world data mining…

机器学习 · 计算机科学 2024-08-26 Adán José-García , Julie Jacques , Clément Chauvet , Vincent Sobanski , Clarisse Dhaenens

Multiple clustering aims at discovering diverse ways of organizing data into clusters. Despite the progress made, it's still a challenge for users to analyze and understand the distinctive structure of each output clustering. To ease this…

机器学习 · 计算机科学 2019-07-29 Xing Wang , Jun Wang , Carlotta Domeniconi , Guoxian Yu , Guoqiang Xiao , Maozu Guo

Modern deep neural networks have shown remarkable performance in medical image classification. However, such networks either emphasize pixel-intensity features instead of fundamental anatomical structures (e.g., those encoded by topological…

计算机视觉与模式识别 · 计算机科学 2025-12-09 Pengfei Gu , Huimin Li , Haoteng Tang , Dongkuan , Xu , Erik Enriquez , DongChul Kim , Bin Fu , Danny Z. Chen

The field of mathematical morphology offers well-studied techniques for image processing. In this work, we view morphological operations through the lens of persistent homology, a tool at the heart of the field of topological data analysis.…

计算几何 · 计算机科学 2021-03-25 Yu-Min Chung , Sarah Day , Chuan-Shen Hu

Data quality is crucial for the successful training, generalization and performance of machine learning models. We propose to measure the quality of a subset concerning the dataset it represents, using topological data analysis techniques.…

代数拓扑 · 数学 2024-10-01 Álvaro Torras-Casas , Eduardo Paluzo-Hidalgo , Rocio Gonzalez-Diaz

In this work we use the persistent homology method, a technique in topological data analysis (TDA), to extract essential topological features from the data space and combine them with deep learning features for classification tasks. In TDA,…

计算机视觉与模式识别 · 计算机科学 2023-11-14 Mariana Dória Prata Lima , Gilson Antonio Giraldi , Gastão Florêncio Miranda Junior

Appropriately representing elements in a database so that queries may be accurately matched is a central task in information retrieval; recently, this has been achieved by embedding the graphical structure of the database into a manifold in…

机器学习 · 统计学 2023-07-10 Yueqi Cao , Athanasios Vlontzos , Luca Schmidtke , Bernhard Kainz , Anthea Monod

Living systems exhibit complex yet organized behavior on multiple spatiotemporal scales. To investigate the nature of multiscale coordination in living systems, one needs a meaningful and systematic way to quantify the complex dynamics, a…

适应与自组织系统 · 物理学 2020-03-11 Mengsen Zhang , William D. Kalies , J. A. Scott Kelso , Emmanuelle Tognoli
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