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Background: Biomedical entity normalization is critical to biomedical research because the richness of free-text clinical data, such as progress notes, can often be fully leveraged only after translating words and phrases into structured…

计算与语言 · 计算机科学 2024-05-27 Nicholas J Dobbins

Transformer based pre-trained models such as BERT and its variants, which are trained on large corpora, have demonstrated tremendous success for natural language processing (NLP) tasks. Most of academic works are based on the English…

计算与语言 · 计算机科学 2023-06-27 Muhammed Cihat Ünal , Betül Aygün , Aydın Gerek

Pre-trained Large Language Models (LLMs) often struggle on out-of-domain datasets like healthcare focused text. We explore specialized pre-training to adapt smaller LLMs to different healthcare datasets. Three methods are assessed:…

计算与语言 · 计算机科学 2024-04-01 Niall Taylor , Dan Schofield , Andrey Kormilitzin , Dan W Joyce , Alejo Nevado-Holgado

Ensembles of generative large language models (LLMs) are a promising way to compensate for individual model limitations, integrating the strengths of different LLMs. Existing LLM ensemble methods, however, face limitations such as…

计算与语言 · 计算机科学 2026-03-09 Bo Lv , Nayu Liu , Chen Tang , Xin Liu , Yue Yu , Ping Luo

Deep neural networks have shown good data modelling capabilities when dealing with challenging and large datasets from a wide range of application areas. Convolutional Neural Networks (CNNs) offer advantages in selecting good features and…

计算与语言 · 计算机科学 2018-11-02 Abdulaziz M. Alayba , Vasile Palade , Matthew England , Rahat Iqbal

This study evaluates how well large language models (LLMs) and traditional machine translation (MT) tools translate medical consultation summaries from English into Arabic, Chinese, and Vietnamese. It assesses both patient, friendly and…

计算与语言 · 计算机科学 2025-04-24 Andy Li , Wei Zhou , Rashina Hoda , Chris Bain , Peter Poon

We describe AraNet, a collection of deep learning Arabic social media processing tools. Namely, we exploit an extensive host of publicly available and novel social media datasets to train bidirectional encoders from transformer models…

计算与语言 · 计算机科学 2020-04-14 Muhammad Abdul-Mageed , Chiyu Zhang , Azadeh Hashemi , El Moatez Billah Nagoudi

This paper describes our approach to the MEDIQA-CORR shared task, which involves error detection and correction in clinical notes curated by medical professionals. This task involves handling three subtasks: detecting the presence of…

计算与语言 · 计算机科学 2024-05-15 Satya Kesav Gundabathula , Sriram R Kolar

Scientific team dynamics are critical in determining the nature and impact of research outputs. However, existing methods for classifying author roles based on self-reports and clustering lack comprehensive contextual analysis of…

数字图书馆 · 计算机科学 2025-02-26 Wonduk Seo , Yi Bu

Empowered by vast internal knowledge reservoir, the new generation of large language models (LLMs) demonstrate untapped potential to tackle medical tasks. However, there is insufficient effort made towards summoning up a synergic effect…

计算与语言 · 计算机科学 2025-05-23 Kexin Shang , Chia-Hsuan Chang , Christopher C. Yang

Despite the widespread success of self-supervised learning via masked language models (MLM), accurately capturing fine-grained semantic relationships in the biomedical domain remains a challenge. This is of paramount importance for…

计算与语言 · 计算机科学 2021-04-08 Fangyu Liu , Ehsan Shareghi , Zaiqiao Meng , Marco Basaldella , Nigel Collier

While large language models (LLMs) achieve near-perfect scores on medical licensing exams, these evaluations inadequately reflect the complexity and diversity of real-world clinical practice. We introduce MedHELM, an extensible evaluation…

Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…

计算与语言 · 计算机科学 2023-12-27 Fahime Shahrokh , Nasser Ghadiri , Rasoul Samani , Milad Moradi

The processing of numerical values is a rapidly developing area in the field of Language Models (LLMs). Despite numerous advancements achieved by previous research, significant challenges persist, particularly within the healthcare domain.…

计算与语言 · 计算机科学 2025-03-04 Boammani Aser Lompo , Thanh-Dung Le

Mental health disorders pose a growing public health concern in the Arab world, emphasizing the need for accessible diagnostic and intervention tools. Large language models (LLMs) offer a promising approach, but their application in Arabic…

计算与语言 · 计算机科学 2025-01-14 Noureldin Zahran , Aya E. Fouda , Radwa J. Hanafy , Mohammed E. Fouda

Recently, Large Language Models (LLM) have demonstrated impressive capability to solve a wide range of tasks. However, despite their success across various tasks, no prior work has investigated their capability in the biomedical domain yet.…

计算与语言 · 计算机科学 2024-02-21 Israt Jahan , Md Tahmid Rahman Laskar , Chun Peng , Jimmy Huang

Large Language Models (LLMs) have demonstrated superior abilities in tasks such as chatting, reasoning, and question-answering. However, standard LLMs may ignore crucial paralinguistic information, such as sentiment, emotion, and speaking…

This paper introduces a novel approach for identifying the possible large language models (LLMs) involved in text generation. Instead of adding an additional classification layer to a base LM, we reframe the classification task as a…

计算与语言 · 计算机科学 2024-02-08 Yutian Chen , Hao Kang , Vivian Zhai , Liangze Li , Rita Singh , Bhiksha Raj

This paper describes our submissions for the Social Media Mining for Health (SMM4H)2021 shared tasks. We participated in 2 tasks:(1) Classification, extraction and normalization of adverse drug effect (ADE) mentions in English tweets…

计算与语言 · 计算机科学 2021-04-16 Sidharth R , Abhiraj Tiwari , Parthivi Choubey , Saisha Kashyap , Sahil Khose , Kumud Lakara , Nishesh Singh , Ujjwal Verma

Recent advances in artificial intelligence, particularly large language models LLMs, have shown promising capabilities in transforming rare disease research. This survey paper explores the integration of LLMs in the analysis of rare…

计算与语言 · 计算机科学 2025-05-26 Valentina Carbonari , Pierangelo Veltri , Pietro Hiram Guzzi