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We develop a correlation-corrected transport theory in order to predict ionic and polymer transport properties of membrane nanopores in physical conditions where mean-field electrostatics breaks down. The experimentally observed low KCl…

软凝聚态物质 · 物理学 2014-11-06 Sahin Buyukdagli , Tapio Ala-Nissila

Polymer translocation experiments typically involve anionic polyelectrolytes such as DNA molecules driven through negatively charged nanopores. Quantitative modelling of polymer capture to the nanopore followed by translocation therefore…

软凝聚态物质 · 物理学 2017-10-11 Sahin Buyukdagli , Tapio Ala-Nissila

We analyze the interaction of two conducting, charged polymer chains in solution using a minimal model for their electronic degrees of freedom. We show that a crossing of the two chains in which the polymers pass within Angstroms of each…

软凝聚态物质 · 物理学 2009-11-10 Jeremy D. Schmit , Alex J. Levine

Using molecular dynamics simulations we study the behavior of a dilute solution of strongly charged polyelectrolytes in poor solvents, where we take counterions explicitly into account. We focus on the chain conformational properties under…

软凝聚态物质 · 物理学 2007-05-23 H. -J. Limbach , C. Holm

Polyelectrolytes such as single and double stranded DNA and many synthetic polymers undergo two structural transitions upon increasing the concentration of multivalent salt or molecules. First, the expanded-stretched chains in low…

软凝聚态物质 · 物理学 2009-10-31 Francisco J. Solis , Monica Olvera de la Cruz

In this work we investigated the question of how the molecular nature of the dielectric media and the polymer-solvent dielectric mismatch affect the collapse of a polyelectrolyte chain in solution by means of dissipative particle dynamics…

软凝聚态物质 · 物理学 2021-12-15 Yulia D. Gordievskaya , Elena Yu. Kramarenko , Alexey A. Gavrilov

We demonstrate that a highly charged polyelectrolyte confined in a spherical cavity undergoes reversible transformations between amorphous conformations to a four-fold symmetry morphology as a function of dielectric mismatch between the…

软凝聚态物质 · 物理学 2019-08-20 Trung Dac Nguyen , Monica Olvera de la Cruz

The transport of polyelectrolytes confined by oppositely charged surfaces and driven by a constant electric field is of interest in studies of DNA separation according to size. Using molecular dynamics simulations that include surface…

软凝聚态物质 · 物理学 2020-09-15 Debarshee Bagchi , Monica Olvera de la Cruz

The purpose of this work is to create a model of a nanofluidic transistor which is able to mimic the effects of pH on nanopore conductance. The pH of the electrolyte is an experimentally controllable parameter through which the charge…

介观与纳米尺度物理 · 物理学 2019-10-02 Dávid Fertig , Mónika Valiskó , Dezső Boda

Correlated anion and cation motion can significantly reduce the overall ion conductivity in electrolytes versus the ideal conductivity calculated based on the diffusion constants alone. Using coarse-grained molecular dynamics simulations,…

软凝聚态物质 · 物理学 2020-06-01 Kuan-Hsuan Shen , Lisa M. Hall

Self-assembly of polymers at liquid interfaces using non-covalent interactions has emerged as a promising technique to reversibly produce self-healing membranes. Besides the assembly process, it is also crucial to control the mechanical…

The electrostatic complexation between DOTAP-DOPC unilamellar liposomes and an oppositely charged polyelectrolyte (NaPA) has been investigated in a wide range of the liposome surface charge density. We systematically characterized the…

软凝聚态物质 · 物理学 2015-03-11 Simona Sennato , Laura Carlini , Domenico Truzzolillo , Federico Bordi

We present a theory for the equilibrium structure of polyelectrolyte solutions. The main element is a simple, new optimization scheme that allows theories such as the random phase approximation (RPA) to handle the harsh repulsive forces…

软凝聚态物质 · 物理学 2009-11-10 James P. Donley , David R. Heine , David T. Wu

Titration of methacrylic acid / ethyl-acrylate copolymers is studied experimentally and theoretically. At low salt concentrations, this polyacid exhibits a plateau in the titration curve below the neutralization point. The plateau has been…

软凝聚态物质 · 物理学 2007-05-23 I. Borukhov , D. Andelman , R. Borrega , M. Cloitre , L. Leibler , H. Orland

This chapter deals with charged polymers (polyelectrolytes) in solution and at surfaces. The behavior of polyelectrolytes is markedly different from that of neutral polymers. In bulk solutions, i.e. disregarding the surface effect, there…

软凝聚态物质 · 物理学 2009-09-25 Roland R. Netz , David Andelman

We scrutinize the effect of polyvalent ions on polymer-DNA interactions. We extend a recently developed test charge theory to the case of a stiff polymer interacting with a DNA molecule in an electrolyte mixture. The theory accounts for…

软凝聚态物质 · 物理学 2017-03-08 Sahin Buyukdagli

The article presents a comprehensive study of counterion dynamics around a generic linear polyelectrolyte (PE) chain with the help of coarse-grained computer simulations. The ion-chain coupling is discussed in the form of binding time,…

软凝聚态物质 · 物理学 2022-04-13 Keerthi Radhakrishnan , Sunil P. Singh

We investigate the complexation of a highly charged sphere with a long flexible polyelectrolyte, \textit{both negatively charged} in salt free environment. Electroneutrality is insured by the presence of divalent counterions. Using…

软凝聚态物质 · 物理学 2007-05-23 Rene Messina , Christian Holm , Kurt Kremer

Protonation of DNA basepairs is a reversible phenomenon which can be controlled by tuning the pH of the system. Under mild acidic conditions, the hydrogen bonding pattern of the DNA basepairs undergoes a change. We study the effect of…

材料科学 · 物理学 2007-07-31 Sairam S. Mallajosyula , Swapan K Pati

In this study, we propose a theoretical framework to investigate the interactions between flexible polymer chains, specifically polyelectrolytes (PEs). By calculating the system's free energy while considering position-dependent mutual…

软凝聚态物质 · 物理学 2024-05-13 Souradeep Ghosh