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Causal discovery in time-series is a fundamental problem in the machine learning community, enabling causal reasoning and decision-making in complex scenarios. Recently, researchers successfully discover causality by combining neural…

机器学习 · 计算机科学 2023-08-17 Yuxiao Cheng , Lianglong Li , Tingxiong Xiao , Zongren Li , Qin Zhong , Jinli Suo , Kunlun He

We introduce a rigorous mathematical framework for Granger causality in extremes, designed to identify causal links from extreme events in time series. Granger causality plays a pivotal role in uncovering directional relationships among…

机器学习 · 统计学 2024-10-21 Juraj Bodik , Olivier C. Pasche

Identifying the causal structure of systems with multiple dynamic elements is critical to several scientific disciplines. The conventional approach is to conduct statistical tests of causality, for example with Granger Causality, between…

机器学习 · 统计学 2022-03-22 Jacek P. Dmochowski

Human aging is a process controlled by both genetics and environment. Many studies have been conducted to identify a subset of genes related to aging from the human genome. Biologists implicitly categorize age-related genes into genes that…

基因组学 · 定量生物学 2023-11-17 Salman Mohamadi , Donald A. Adjeroh

This paper indicates causality as the tool that unifies the analysis of both activations and connectivity of brain areas, obtained with fMRI data. Causality analysis is commonly applied to study connectivity, so this work focuses on…

统计方法学 · 统计学 2011-02-25 Nevio Dubbini

Important information on the structure of complex systems, consisting of more than one component, can be obtained by measuring to which extent the individual components exchange information among each other. Such knowledge is needed to…

无序系统与神经网络 · 物理学 2009-11-13 Daniele Marinazzo , Mario Pellicoro , Sebastiano Stramaglia

Granger causality is widely used for causal structure discovery in complex systems from multivariate time series data. Traditional Granger causality tests based on linear models often fail to detect even mild non-linear causal…

机器学习 · 计算机科学 2025-10-23 Ziyi Zhang , Shaogang Ren , Xiaoning Qian , Nick Duffield

Granger causality has been used for the investigation of the inter-dependence structure of the underlying systems of multi-variate time series. In particular, the direct causal effects are commonly estimated by the conditional Granger…

统计方法学 · 统计学 2016-04-20 Elsa Siggiridou , Dimitris Kugiumtzis

We discuss the use of multivariate Granger causality in presence of redundant variables: the application of the standard analysis, in this case, leads to under-estimation of causalities. Using the un-normalized version of the causality…

定量方法 · 定量生物学 2015-05-14 L. Angelini , M. de Tommaso , D. Marinazzo , L. Nitti , M. Pellicoro , S. Stramaglia

Dependence between nodes in a network is an important concept that pervades many areas including finance, politics, sociology, genomics and the brain sciences. One way to characterize dependence between components of a multivariate time…

机器学习 · 统计学 2024-08-08 Malik Shahid Sultan , Samuel Horvath , Hernando Ombao

We propose a graphical model for representing networks of stochastic processes, the minimal generative model graph. It is based on reduced factorizations of the joint distribution over time. We show that under appropriate conditions, it is…

信息论 · 计算机科学 2015-03-13 Christopher J. Quinn , Negar Kiyavash , Todd P. Coleman

It is widely held that a substantial genetic component underlies Bipolar Disorder (BD) and other neuropsychiatric disease traits. Recent efforts have been aimed at understanding the genetic basis of disease susceptibility, with genome-wide…

We show that a normalized alignment free similarity measure, called D2z, can be used to detect potential regulatory relations for gene sets when little is known about the regulatory elements involved. One scenario where such gene sets arise…

基因组学 · 定量生物学 2013-04-05 Miriam Ruth Kantorovitz , David Tcheng , Michael I. Lerman , Eric Jakobsson

Multivariate time series anomaly detection has numerous real-world applications and is being extensively studied. Modeling pairwise correlations between variables is crucial. Existing methods employ learnable graph structures and graph…

机器学习 · 计算机科学 2025-01-24 Zehao Liu , Mengzhou Gao , Pengfei Jiao

Identifying causality behind complex systems plays a significant role in different domains, such as decision making, policy implementations, and management recommendations. However, existing causality studies on temporal event sequences…

计算机视觉与模式识别 · 计算机科学 2022-06-14 Sujia Zhu , Yue Shen , Zihao Zhu , Wang Xia , Baofeng Chang , Ronghua Liang , Guodao Sun

Granger causality is a statistical notion of causal influence based on prediction via vector autoregression. For Gaussian variables it is equivalent to transfer entropy, an information-theoretic measure of time-directed information transfer…

定量方法 · 定量生物学 2021-02-17 Sebastiano Stramaglia , Tomas Scagliarini , Yuri Antonacci , Luca Faes

Causality in time series can be challenging to determine, especially in the presence of non-linear dependencies. Granger causality helps analyze potential relationships between variables, thereby offering a method to determine whether one…

机器学习 · 计算机科学 2025-10-13 Harsh Poonia , Felix Divo , Kristian Kersting , Devendra Singh Dhami

Gene regulatory network inference (GRNI) is a challenging problem, particularly owing to the presence of zeros in single-cell RNA sequencing data: some are biological zeros representing no gene expression, while some others are technical…

定量方法 · 定量生物学 2024-03-26 Haoyue Dai , Ignavier Ng , Gongxu Luo , Peter Spirtes , Petar Stojanov , Kun Zhang

Directed information theory deals with communication channels with feedback. When applied to networks, a natural extension based on causal conditioning is needed. We show here that measures built from directed information theory in networks…

信息论 · 计算机科学 2011-11-02 P. O. Amblard , O. J. J. Michel

The achievement of the 2030 Sustainable Development Goals (SDGs) is dependent upon strategic resource distribution. We propose a causal discovery framework using Panel Vector Autoregression, along with both country-specific fixed effects…