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Accurate prediction of thermodynamic properties is pivotal in chemical engineering for optimizing process efficiency and sustainability. Physical group-contribution (GC) methods are widely employed for this purpose but suffer from…

化学物理 · 物理学 2025-01-28 Nicolas Hayer , Thorsten Wendel , Stephan Mandt , Hans Hasse , Fabian Jirasek

Calibrating mathematical models of biological processes is essential for achieving predictive accuracy and gaining mechanistic insight. However, this task remains challenging due to limited and noisy data, significant biological…

定量方法 · 定量生物学 2025-12-04 Piotr Gwiazda , Alexey Kazarnikov , Anna Marciniak-Czochra , Zuzanna Szymańska

Large pre-trained models have demonstrated extensive applications across various fields. However, fine-tuning these models for specific downstream tasks demands significant computational resources and storage. One fine-tuning method,…

机器学习 · 计算机科学 2025-07-02 Xuanbo Liu , Liu Liu , Fuxiang Wu , Fusheng Hao , Xianglong Liu

We introduce a novel nonlinear Kalman filter that utilizes reparametrization gradients. The widely used parametric approximation is based on a jointly Gaussian assumption of the state-space model, which is in turn equivalent to minimizing…

机器学习 · 计算机科学 2023-03-09 San Gultekin , Brendan Kitts , Aaron Flores , John Paisley

Accurate phase equilibria are foundational to alloy design because they encode the underlying thermodynamics governing stability, transformations, and processing windows. However, while the CALculation of Phase Diagrams (CALPHAD) provides a…

机器学习 · 计算机科学 2026-04-21 Eunjeong Park , Amrita Basak

Cardiac muscle tissue during relaxation is commonly modelled as a hyperelastic material with strongly nonlinear and anisotropic stress response. Adapting the behavior of such a model to experimental or patient data gives rise to a parameter…

组织与器官 · 定量生物学 2016-03-16 Gabriel Balaban , Martin S. Alnæs , Joakim Sundnes , Marie E. Rognes

The multiscale model combining the multiconfigurational self-consistent field (MCSCF) method with the fully atomistic polarizable Fluctuating Charges (FQ) force field (J. Chem. Theory Comput. 2024, 20, 9954-9967) is here extended to the…

化学物理 · 物理学 2025-11-14 Francesco Mazza , Marco Trinari , Chiara Sepali , Chiara Cappelli

Before a car-following model can be applied in practice, it must first be validated against real data in a process known as calibration. This paper discusses the formulation of calibration as an optimization problem, and compares different…

系统与控制 · 电气工程与系统科学 2024-12-20 Ronan Keane , H. Oliver Gao

In this paper, we discuss the convergence of an Algebraic MultiGrid (AMG) method for general symmetric positive-definite matrices. The method relies on an aggregation algorithm, named \emph{coarsening based on compatible weighted matching},…

数值分析 · 数学 2023-07-18 Pasqua D'Ambra , Fabio Durastante , Salvatore Filippone , Ludmil Zikatanov

The state-of-the-art researches indicate that analytic algorithms are promising in handling complex floorplanning scenarios. However, it is challenging to generate compact floorplans with excellent wirelength optimization effect due to the…

机器学习 · 计算机科学 2025-09-29 Xinyan Meng , Huabin Cheng , Rujie Chen , Ning Xu , Yu Chen , Wei Zhang

This paper proposes a conjugate-gradient-based Adam algorithm blending Adam with nonlinear conjugate gradient methods and shows its convergence analysis. Numerical experiments on text classification and image classification show that the…

最优化与控制 · 数学 2020-03-04 Yu Kobayashi , Hideaki Iiduka

The conjugate gradient method (CG) is typically used with a preconditioner which improves efficiency and robustness of the method. Many preconditioners include parameters and a proper choice of a preconditioner and its parameters is often…

数值分析 · 数学 2019-06-04 Alexandr Katrutsa , Mike Botchev , George Ovchinnikov , Ivan Oseledets

The use of mathematical models to make predictions about tumor growth and response to treatment has become increasingly more prevalent in the clinical setting. The level of complexity within these models ranges broadly, and the calibration…

定量方法 · 定量生物学 2021-12-28 Allison L. Lewis , Kathleen M. Storey , Heyrim Cho , Anna C. Zittle

The certified descent algorithm (CDA) is a gradient-based method for shape optimization which certifies that the direction computed using the shape gradient is a genuine descent direction for the objective functional under analysis. It…

数值分析 · 数学 2018-05-28 Matteo Giacomini

We propose a gradient-based method for quadratic programming problems with a single linear constraint and bounds on the variables. Inspired by the GPCG algorithm for bound-constrained convex quadratic programming [J.J. Mor\'e and G.…

最优化与控制 · 数学 2019-02-19 Daniela di Serafino , Gerardo Toraldo , Marco Viola , Jesse Barlow

High-through computational thermodynamic approaches are becoming an increasingly popular tool to uncover novel compounds. However, traditional methods tend to be limited to stability predictions of stoichiometric phases at absolute zero.…

材料科学 · 物理学 2022-04-20 Sayan Samanta , Axel Van de Walle

We aim to investigate relationships between select processing parameters or inputs (composition, temperature, annealing time) and two structural parameters, specifically, the mean radius and volume fraction of the Fe$_3$Si nanocrystals. To…

材料科学 · 物理学 2018-09-05 Rajesh Jha , Nirupam Chakraborti , David Diercks , Aaron Stebner , Cristian V. Ciobanu

We introduce Gradient Agreement Filtering (GAF) to improve on gradient averaging in distributed deep learning optimization. Traditional distributed data-parallel stochastic gradient descent involves averaging gradients of microbatches to…

机器学习 · 计算机科学 2024-12-31 Francois Chaubard , Duncan Eddy , Mykel J. Kochenderfer

Computer models, aiming at simulating a complex real system, are often calibrated in the light of data to improve performance. Standard calibration methods assume that the optimal values of calibration parameters are invariant to the model…

统计方法学 · 统计学 2017-09-01 Georgios Karagiannis , Bledar A. Konomi , Guang Lin

A scaled conjugate gradient method that accelerates existing adaptive methods utilizing stochastic gradients is proposed for solving nonconvex optimization problems with deep neural networks. It is shown theoretically that, whether with…

机器学习 · 计算机科学 2024-12-17 Naoki Sato , Koshiro Izumi , Hideaki Iiduka