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This document explores the advantages of integrating open source software and practices in managing a scientific lab, emphasizing reproducibility and the avoidance of pitfalls. It details practical applications from website management using…

计算机与社会 · 计算机科学 2024-05-14 Julien Cohen-Adad

In this study, we reproduced the work done in the paper "XRec: Large Language Models for Explainable Recommendation" by Ma et al. (2024). The original authors introduced XRec, a model-agnostic collaborative instruction-tuning framework that…

计算与语言 · 计算机科学 2025-10-09 Ranjan Mishra , Julian I. Bibo , Quinten van Engelen , Henk Schaapman

This paper introduces reproducible research, and explains its importance, benefits and challenges. Some important tools for conducting reproducible research in Transportation Research are also introduced. Moreover, the source code for…

数字图书馆 · 计算机科学 2021-05-17 Zuduo Zheng

Helix is an open-source, extensible, Python-based software framework to facilitate reproducible and interpretable machine learning workflows for tabular data. It addresses the growing need for transparent experimental data analytics…

The ubiquity of computation in modern scientific research inflicts new challenges for reproducibility. While most journals now require code and data be made available, the standards for organization, annotation, and validation remain lax,…

其他定量生物学 · 定量生物学 2022-10-07 Griffin Chure

One of the main goals of Open Science is to make research more reproducible. There is no consensus, however, on what exactly "reproducibility" is, as opposed for example to "replicability", and how it applies to different research fields.…

数字图书馆 · 计算机科学 2024-10-15 Sebastian Barzaghi , Alice Bordignon , Bianca Gualandi , Silvio Peroni

Many research fields are currently reckoning with issues of poor levels of reproducibility. Some label it a "crisis", and research employing or building Machine Learning (ML) models is no exception. Issues including lack of transparency,…

Why are some research studies easy to reproduce while others are difficult? Casting doubt on the accuracy of scientific work is not fruitful, especially when an individual researcher cannot reproduce the claims made in the paper. There…

数字图书馆 · 计算机科学 2023-08-25 Akhil Pandey Akella , David Koop , Hamed Alhoori

With the increased interest in computational sciences, machine learning (ML), pattern recognition (PR) and big data, governmental agencies, academia and manufacturers are overwhelmed by the constant influx of new algorithms and techniques…

软件工程 · 计算机科学 2017-07-28 André Anjos , Laurent El-Shafey , Sébastien Marcel

Reproducibility is one of the key characteristics of good science, but hard to achieve for experimental disciplines like Internet measurements and networked systems. This guide provides advice to researchers, particularly those new to the…

The aim of this article is to introduce a reporting framework for reproducible, interactive research applied to Big Clinical Data, based on open source technologies. The framework is constituted by the following three axes: (i) data, (ii)…

The drive for reproducibility in the computational sciences has provoked discussion and effort across a broad range of perspectives: technological, legislative/policy, education, and publishing. Discussion on these topics is not new, but…

定量方法 · 定量生物学 2018-10-10 Daniel G. Hurley , Joseph Cursons , Matthew Faria , David M. Budden , Vijay Rajagopal , Edmund J. Crampin

Being able to duplicate published research results is an important process of conducting research whether to build upon these findings or to compare with them. This process is called "replicability" when using the original authors'…

数字图书馆 · 计算机科学 2020-05-07 Nicolas Bonneel , David Coeurjolly , Julie Digne , Nicolas Mellado

Automatic generation of graphic designs has recently received considerable attention. However, the state-of-the-art approaches are complex and rely on proprietary datasets, which creates reproducibility barriers. In this paper, we propose…

计算机视觉与模式识别 · 计算机科学 2024-06-13 Naoto Inoue , Kento Masui , Wataru Shimoda , Kota Yamaguchi

The general purpose of a scientific publication is the exchange and spread of knowledge. A publication usually reports a scientific result and tries to convince the reader that it is valid. With an ever-growing number of papers relying on…

数字图书馆 · 计算机科学 2018-08-24 Christian Schulz

Concerns about the reproducibility of deep learning research are more prominent than ever, with no clear solution in sight. The relevance of machine learning research can only be improved if we also employ empirical rigor that incorporates…

机器学习 · 计算机科学 2022-10-21 Attila Simko , Anders Garpebring , Joakim Jonsson , Tufve Nyholm , Tommy Löfstedt

Research reproducibility - i.e., rerunning analyses on original data to replicate the results - is paramount for guaranteeing scientific validity. However, reproducibility is often very challenging, especially in research fields where…

Data is the most powerful decision-making tool at our disposal. However, despite the exponentially growing volumes of data generated in the world, putting it to effective use still presents many challenges. Relevant data seems to be never…

数据库 · 计算机科学 2021-11-12 Sergii Mikhtoniuk , Ozge Nilay Yalcin

The "reproducibility crisis" has been a highly visible source of scientific controversy and dispute. Here, I propose and review several avenues for identifying and prioritizing research studies for the purpose of targeted validation. Of the…

计算机与社会 · 计算机科学 2018-04-24 Gopal P. Sarma