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Self-supervised adaptation (SSA) improves foundation model transfer to medical domains but is computationally prohibitive. Although parameter efficient fine-tuning methods such as LoRA have been explored for supervised adaptation, their…

计算机视觉与模式识别 · 计算机科学 2025-09-30 Moein Sorkhei , Emir Konuk , Jingyu Guo , Chanjuan Meng , Christos Matsoukas , Kevin Smith

A new statistical technique for constructing linear latent structure (LLS) models from available data, supported by well established theoretical results and an efficient algorithm, is presented. The method reduces the problem of estimating…

统计理论 · 数学 2007-06-13 I. Akushevich , M. Kovtun , A. I. Yashin , K. G. Manton

Due to the demand for efficient fine-tuning of large language models, Low-Rank Adaptation (LoRA) has been widely adopted as one of the most effective parameter-efficient fine-tuning methods. Nevertheless, while LoRA improves efficiency,…

计算与语言 · 计算机科学 2025-06-13 Naibin Gu , Zhenyu Zhang , Xiyu Liu , Peng Fu , Zheng Lin , Shuohuan Wang , Yu Sun , Hua Wu , Weiping Wang , Haifeng Wang

Recent advances in deep learning have relied heavily on the use of large Transformers due to their ability to learn at scale. However, the core building block of Transformers, the attention operator, exhibits quadratic cost in sequence…

Deep learning has transformed protein design, enabling accurate structure prediction, sequence optimization, and de novo protein generation. Advances in single-chain protein structure prediction via AlphaFold2, RoseTTAFold, ESMFold, and…

机器学习 · 计算机科学 2025-02-27 Gregory W. Kyro , Tianyin Qiu , Victor S. Batista

High-dimensional biological data often exhibit a severe mismatch between feature dimensionality and sample size, making reliable classification difficult in extremely small-data regimes. In these settings, kernel methods can lose…

机器学习 · 计算机科学 2026-05-21 Alakananda Mitra , David H. Fleisher , Vangimalla Reddy , Chittaranjan Ray

Designing novel proteins with desired characteristics remains a significant challenge due to the large sequence space and the complexity of sequence-function relationships. Efficient exploration of this space to identify sequences that meet…

机器学习 · 计算机科学 2026-03-04 Erik Hartman , Di Tang , Johan Malmström

It is a common practice in natural language processing to pre-train a single model on a general domain and then fine-tune it for downstream tasks. However, when it comes to Large Language Models, fine-tuning the entire model can be…

人工智能 · 计算机科学 2024-10-29 Cristian Meo , Ksenia Sycheva , Anirudh Goyal , Justin Dauwels

The inability to resolve deep node relationships of highly divergent/rapidly evolving protein families is a major factor that stymies evolutionary studies. In this manuscript, we propose a Multiple Sequence Alignment (MSA) independent…

The field of RNA secondary structure prediction has made significant progress with the adoption of deep learning techniques. In this work, we present the RNAformer, a lean deep learning model using axial attention and recycling in the…

机器学习 · 计算机科学 2023-07-20 Jörg K. H. Franke , Frederic Runge , Frank Hutter

The Segment Anything Model (SAM) stands as a foundational framework for image segmentation. While it exhibits remarkable zero-shot generalization in typical scenarios, its advantage diminishes when applied to specialized domains like…

计算机视觉与模式识别 · 计算机科学 2024-02-01 Zihan Zhong , Zhiqiang Tang , Tong He , Haoyang Fang , Chun Yuan

We report a mixture of expert strategy to create fine-tuned large language models using a deep layer-wise token-level approach based on low-rank adaptation (LoRA). Starting with a set of pre-trained LoRA adapters, our gating strategy uses…

软凝聚态物质 · 物理学 2024-04-02 Eric L. Buehler , Markus J. Buehler

Adapting large pretrained models to new tasks efficiently and continually is crucial for real-world deployment but remains challenging due to catastrophic forgetting and the high cost of retraining. While parameter-efficient tuning methods…

机器学习 · 计算机科学 2026-02-06 Prakhar Kaushik , Ankit Vaidya , Shravan Chaudhari , Rama Chellappa , Alan Yuille

Low-rank Adaptation (LoRA) has gained popularity as a fine-tuning approach for Large Language Models (LLMs) due to its low resource requirements and good performance. While a plethora of work has investigated improving LoRA serving…

机器学习 · 计算机科学 2025-08-06 Minghao Yan , Zhuang Wang , Zhen Jia , Shivaram Venkataraman , Yida Wang

In this work, we perform an exploratory study on synthesizing deep neural networks using biological synaptic strength distributions, and the potential influence of different distributions on modelling performance particularly for the…

神经与进化计算 · 计算机科学 2017-07-04 A. H. Karimi , M. J. Shafiee , A. Ghodsi , A. Wong

Parameter-efficient fine-tuning methods such as LoRA enable efficient adaptation of large pretrained models but often fall short of full fine-tuning performance. Existing approaches focus on aligning parameter updates, which only indirectly…

机器学习 · 计算机科学 2026-04-01 Frédéric Zheng , Alexandre Proutière

Low-Rank Adaptation~(LoRA), which updates the dense neural network layers with pluggable low-rank matrices, is one of the best performed parameter efficient fine-tuning paradigms. Furthermore, it has significant advantages in cross-task…

机器学习 · 计算机科学 2024-10-25 Yuren Mao , Yuhang Ge , Yijiang Fan , Wenyi Xu , Yu Mi , Zhonghao Hu , Yunjun Gao

Low-Rank Adaptation (LoRA) enables parameter-efficient fine-tuning of large language models by decomposing weight updates into low-rank matrices, significantly reducing storage and computational overhead. While effective, standard LoRA…

机器学习 · 计算机科学 2025-09-03 Patryk Marszałek , Klaudia Bałazy , Jacek Tabor , Tomasz Kuśmierczyk

Low-Rank Adaptation (LoRA) is a widely adopted parameter-efficient fine-tuning (PEFT) method validated across NLP and CV domains. However, LoRA faces an inherent low-rank bottleneck: narrowing its performance gap with full finetuning…

机器学习 · 计算机科学 2025-12-03 Haonan Dong , Wenhao Zhu , Guojie Song , Liang Wang

Learned Iterative Shrinkage-Thresholding Algorithm (LISTA) introduces the concept of unrolling an iterative algorithm and training it like a neural network. It has had great success on sparse recovery. In this paper, we show that adding…

机器学习 · 计算机科学 2021-11-01 Xiaohan Chen , Jialin Liu , Zhangyang Wang , Wotao Yin