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The effect of topology on the collapse transition and instantaneous shape of an energy polydisperse polymer (a model heteropolymer) is studied by means of computer simulations. In particular, we consider three different chain topology,…

软凝聚态物质 · 物理学 2022-11-24 Thoudam Vilip Singh , Lenin S. Shagolsem

The coil-globule transition of an energy polydisperse chain, a model heteropolymer system where the number of monomer species is as large as the total number of monomers, is studied by means of computer simulations. In this study, we…

软凝聚态物质 · 物理学 2022-07-21 Thoudam Vilip Singh , Lenin S. Shagolsem

We present an off-lattice statistical model of a single polymer chain in mixed solvent media. Taking into account a polymer conformational entropy, renormalization of solvent composition near the polymer backbone, the universal…

软凝聚态物质 · 物理学 2016-06-09 Yu. A. Budkov , A. L. Kolesnikov , N. N. Kalikin , M. G. Kiselev

Polymers adopt extended coil and compact globule states according to the balance between entropy and interaction energies. The transition of a polymer between an extended coil state and compact globule state can be induced by changing…

软凝聚态物质 · 物理学 2015-10-28 Kenta Odagiri , Kazuhiko Seki

We investigate the structural and topological properties of hydrophobic homopolymer chains in aqueous solutions using molecular dynamics simulations and circuit topology (CT) analysis. By combining geometric observables, such as radius of…

软凝聚态物质 · 物理学 2026-01-01 Junichi Komatsu , Kenichiro Koga , Jonas Berx

We present a simple analytical theory of flexible polymer chain dissolved in a good solvent, carrying permanent freely oriented dipoles on the monomers. We take into account the dipole correlations within the random phase approximation…

软凝聚态物质 · 物理学 2017-03-17 Yu. A. Budkov , N. N. Kalikin , A. L. Kolesnikov

The coil-globule transition of hetero-polymer chains is studied here. By means of extensive Molecular Dynamics simulations, we show that the transition is directly linked to the complexity of the chain, which depends on the number of…

软凝聚态物质 · 物理学 2022-09-07 Fabrizio Tafuri , Andrea Maria Chiariello

We investigate a lattice model of polymers where the nearest-neighbour monomer-monomer interaction strengths differ according to whether the local configurations have so-called ``hydrogen-like'' formations or not. If the interaction…

软凝聚态物质 · 物理学 2009-11-13 J Krawczyk , A L Owczarek , T Prellberg

The equilibrium thermodynamic properties of a linear polymer chain confined to a space between two impenetrable walls (lines) at a distance $D$ under various solvent conditions have been studied using series analysis and exact enumeration…

统计力学 · 物理学 2007-05-23 P. K. Mishra , Sanjay Kumar

In this work we investigated the question of how the molecular nature of the dielectric media and the polymer-solvent dielectric mismatch affect the collapse of a polyelectrolyte chain in solution by means of dissipative particle dynamics…

软凝聚态物质 · 物理学 2021-12-15 Yulia D. Gordievskaya , Elena Yu. Kramarenko , Alexey A. Gavrilov

In this paper we summarize some results of our theoretical investigations of helix-coil transition both in single-strand (polypeptides) and two-strand (polynucleotides) macromolecules. The Hamiltonian does not contain any parameter designed…

In this study, we propose a theoretical framework to investigate the interactions between flexible polymer chains, specifically polyelectrolytes (PEs). By calculating the system's free energy while considering position-dependent mutual…

软凝聚态物质 · 物理学 2024-05-13 Souradeep Ghosh

The coil-globule transition has been studied for A-B copolymer chains both by means of lattice Monte Carlo simulations using bond fluctuation algorithm and by a numerical self-consistent field method. Copolymer chains of fixed length with A…

We investigate the dynamics of the collapse of a single copolymer chain, when the solvent quality is suddenly quenched from good to poor. We employ Brownian dynamics simulations of a bead-spring chain model and incorporate fluctuating…

软凝聚态物质 · 物理学 2020-07-03 Tri Thanh Pham , Burkhard Duenweg , J. Ravi Prakash

The effect of polydispersity on the freezing transition of hard spheres is examined within a moment description. At low polydispersities a single fluid-to-crystal transition is recovered. With increasing polydispersity we find a density…

软凝聚态物质 · 物理学 2007-05-23 Paul Bartlett , Patrick B. Warren

A coarse-grained molecular dynamics model of linear polyethylene-like polymer chain system was built to investigate the responds of structure and mechanical properties during uniaxial deformation. The influence of chain length, temperature,…

软凝聚态物质 · 物理学 2020-05-19 Cheng Li , Yingrui Shang , Huan Xu , Jinqing Li , Shichun Jiang

Using molecular dynamics simulations we study the thermodynamic behavior of a single-component covalent material described by the recently proposed Environment-Dependent Interatomic Potential (EDIP). The parameterization of EDIP for silicon…

材料科学 · 物理学 2009-11-07 P. Keblinski , M. Z. Bazant , R. K. Dash , M. M. Treacy

Polydispersity is found to have a significant effect on the potential energy landscape; the the average inherent structure energy with temperature decreases with polydispersity. Increasing polydispersity at fixed volume fraction decreases…

软凝聚态物质 · 物理学 2009-11-13 Sneha Elizabeth Abraham , Sarika Maitra Bhattacharrya , Biman Bagchi

We explore the mechanical response of a single polyelectrolyte chain under tension in good and poor solvents using a combination of simulation and theory. In poor solvents, where the equilibrium state of the chain is a collapsed globule, we…

软凝聚态物质 · 物理学 2009-05-29 Ajay S. Panwar , Mark A. Kelly , Buddhapriya Chakrabarti , M. Muthukumar

Using exact enumeration methods and Monte Carlo simulations we study the phase diagram relative to the conformational transitions of a two dimensional diblock copolymer. The polymer is made of two homogeneous strands of monomers of…

统计力学 · 物理学 2009-10-31 Marco Baiesi , Enrico Carlon , Enzo Orlandini , Attilio L. Stella
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