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Time varying susceptibility of host at individual level due to waning and boosting immunity is known to induce rich long-term behavior of disease transmission dynamics. Meanwhile, the impact of the time varying heterogeneity of host…

种群与进化 · 定量生物学 2018-08-28 Yukihiko Nakata , Ryosuke Omori

Epidemic propagation on networks represents an important departure from traditional massaction models. However, the high-dimensionality of the exact models poses a challenge to both mathematical analysis and parameter inference. By using…

定量方法 · 定量生物学 2023-02-07 István Z. Kiss , Luc Berthouze , Wasiur R. KhudaBukhsh

Novel vehicular communication methods are mostly analyzed simulatively or analytically as real world performance tests are highly time-consuming and cost-intense. Moreover, the high number of uncontrollable effects makes it practically…

网络与互联网体系结构 · 计算机科学 2019-11-22 Benjamin Sliwa , Christian Wietfeld

Understanding the dynamics of infectious disease spread in a heterogeneous population is an important factor in designing control strategies. Here, we develop a novel tensor-driven multi-compartment version of the classic…

种群与进化 · 定量生物学 2020-04-22 Inbar Seroussi , Nir Levy , Elad Yom-Tov

The Susceptible-Infected-Recovered (SIR) model has successfully mimicked the propagation of such airborne diseases as influenza A (H1N1). Although the SIR model has recently been studied in a multilayer networks configuration, in almost all…

物理与社会 · 物理学 2015-07-16 L. G. Alvarez Zuzek , H. E. Stanley , L. A. Braunstein

Diffusion processes in networks are increasingly used to model the spread of information and social influence. In several applications in computational sustainability such as the spread of wildlife, infectious diseases and traffic mobility…

社会与信息网络 · 计算机科学 2013-09-27 Akshat Kumar , Daniel Sheldon , Biplav Srivastava

This study explores a physics-data driven hybrid approach for sea-ice column physics models, in which a machine learning (ML) component acts as a state-dependent parameterization of forecast errors. We examine how perturbations in snow…

Transmission rates in epidemic outbreaks may vary over time depending on the societal response. Non-pharmacological mitigation strategies such as social distancing and the adoption of protective equipment aim precisely at reducing…

种群与进化 · 定量生物学 2020-12-24 Elisa Franco

The outbreaks of Coronavirus Disease 2019 (COVID-19) have impacted the world significantly. Modeling the trend of infection and real-time forecasting of cases can help decision making and control of the disease spread. However, data-driven…

种群与进化 · 定量生物学 2020-09-18 Zhijian Li , Yunling Zheng , Jack Xin , Guofa Zhou

The transmission dynamics of an epidemic are rarely homogeneous. Super-spreading events and super-spreading individuals are two types of heterogeneous transmissibility. Inference of super-spreading is commonly carried out on secondary case…

定量方法 · 定量生物学 2025-01-23 Hannah Craddock , Simon EF Spencer , Xavier Didelot

A semi-parametric, non-linear regression model in the presence of latent variables is applied towards learning network graph structure. These latent variables can correspond to unmodeled phenomena or unmeasured agents in a complex system of…

机器学习 · 统计学 2018-07-03 Jonathan Mei , José M. F. Moura

As the COVID-19 pandemic evolves, reliable prediction plays an important role for policy making. The classical infectious disease model SEIR (susceptible-exposed-infectious-recovered) is a compact yet simplistic temporal model. The…

机器学习 · 计算机科学 2020-10-20 Yunling Zheng , Zhijian Li , Jack Xin , Guofa Zhou

Reconstructing transmission networks is essential for identifying key factors like superspreaders and high-risk locations, which are critical for developing effective pandemic prevention strategies. In this study, we developed a Bayesian…

定量方法 · 定量生物学 2024-09-10 Jianing Xu , Huimin Hu , Gregory Ellison , Lili Yu , Christopher Whalen , Liang Liu

We present a modelling framework for the spreading of epidemics on temporal networks from which both the individual-based and pair-based models can be recovered. The proposed temporal pair-based model that is systematically derived from…

物理与社会 · 物理学 2020-11-17 Rory Humphries , Kieran Mulchrone , Jamie Tratalos , Simon More , Philipp Hövel

This paper proposes a novel approach to predict epidemiological parameters by integrating new real-time signals from various sources of information, such as novel social media-based population density maps and Air Quality data. We implement…

机器学习 · 计算机科学 2023-07-04 Romain Molinas , César Quilodrán Casas , Rossella Arcucci , Ovidiu Şerban

The relationship between traits that influence pathogen virulence and transmission is part of the central canon of the evolution and ecology of infectious disease. However, identifying directional and mechanistic relationships among traits…

种群与进化 · 定量生物学 2026-02-06 Sudam Surasinghe , C. Brandon Ogbunugafor

Compartmental models of epidemics are widely used to forecast the effects of communicable diseases such as COVID-19 and to guide policy. Although it has long been known that such processes take place on social networks, the assumption of…

物理与社会 · 物理学 2024-03-14 Samuel Johnson

Predicting the human burden of vector-borne diseases from limited surveillance data remains a major challenge, particularly in the presence of nonlinear transmission dynamics and delayed effects arising from vector ecology and human…

动力系统 · 数学 2026-02-20 Dimitri Breda , Muhammad Tanveer , Jianhong Wu , Xue Zhang

The contact structure between hosts has a critical influence on disease spread. However, most networkbased models used in epidemiology tend to ignore heterogeneity in the weighting of contacts. This assumption is known to be at odds with…

种群与进化 · 定量生物学 2012-09-03 Christel Kamp , Mathieu Moslonka-Lefebvre , Samuel Alizon

This paper seeks to study the evolution of the COVID-19 pandemic based on daily published data from Worldometer website, using a time-dependent SIR model. Our findings indicate that this model fits well such data, for different chosen…

种群与进化 · 定量生物学 2023-11-28 Rawan H. Madi , Sophie M. Moufawad , Nabil R. Nassif