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DNA-encoded library (DEL) screening has revolutionized the detection of protein-ligand interactions through read counts, enabling rapid exploration of vast chemical spaces. However, noise in read counts, stemming from nonspecific…

机器学习 · 计算机科学 2024-12-05 Hanqun Cao , Mutian He , Ning Ma , Chang-yu Hsieh , Chunbin Gu , Pheng-Ann Heng

DNA-Encoded Library (DEL) technology has enabled significant advances in hit identification by enabling efficient testing of combinatorially-generated molecular libraries. DEL screens measure protein binding affinity though sequencing reads…

定量方法 · 定量生物学 2022-12-16 Kirill Shmilovich , Benson Chen , Theofanis Karaletsos , Mohammad M. Sultan

DNA-Encoded Library (DEL) has proven to be a powerful tool that utilizes combinatorially constructed small molecules to facilitate highly-efficient screening assays. These selection experiments, involving multiple stages of washing,…

定量方法 · 定量生物学 2024-02-14 Benson Chen , Mohammad M. Sultan , Theofanis Karaletsos

DNA-encoded library (DEL) screening and quantitative structure-activity relationship (QSAR) modeling are two techniques used in drug discovery to find small molecules that bind a protein target. Applying QSAR modeling to DEL data can…

DNA-encoded small molecule libraries (DELs) have enabled discovery of novel inhibitors for many distinct protein targets of therapeutic value through screening of libraries with up to billions of unique small molecules. We demonstrate a new…

The success of machine learning in drug discovery hinges on learning the relationship between a chemical structure and its biological activity. While DNA-Encoded Library (DEL) technology can generate the massive datasets required for this…

生物大分子 · 定量生物学 2026-05-11 Mutian He , Hanqun Cao , Cheng Tan , Zijun Gao , Xiaojun Yao , Chunbin Gu , Pheng-Ann Heng

Deep learning methods have been considered promising for accelerating molecular screening in drug discovery and material design. Due to the limited availability of labelled data, various self-supervised molecular pre-training methods have…

机器学习 · 计算机科学 2024-07-17 Yuyan Ni , Shikun Feng , Xin Hong , Yuancheng Sun , Wei-Ying Ma , Zhi-Ming Ma , Qiwei Ye , Yanyan Lan

Accurately predicting molecular properties is a challenging but essential task in drug discovery. Recently, many mono-modal deep learning methods have been successfully applied to molecular property prediction. However, the inherent…

机器学习 · 计算机科学 2024-09-16 Xiaohua Lu , Liangxu Xie , Lei Xu , Rongzhi Mao , Shan Chang , Xiaojun Xu

DNA-Encoded Libraries (DELs) represent a transformative technology in drug discovery, facilitating the high-throughput exploration of vast chemical spaces. Despite their potential, the scarcity of publicly available DEL datasets presents a…

DNA encoded libraries (DELs) are used for rapid large-scale screening of small molecules against a protein target. These combinatorial libraries are built through several cycles of chemistry and DNA ligation, producing large sets of…

The accurate screening of candidate drug ligands against target proteins through computational approaches is of prime interest to drug development efforts. Such virtual screening depends in part on methods to predict the binding affinity…

机器学习 · 计算机科学 2024-10-22 Ho-Joon Lee , Prashant S. Emani , Mark B. Gerstein

DNA-encoded libraries (DELs) are a powerful approach for rapidly screening large numbers of diverse compounds. One of the key challenges in using DELs is library design, which involves choosing the building blocks that will be…

In multi-user millimeter wave (mmWave) multiple-input-multiple-output (MIMO) systems, hybrid precoding is a crucial task to lower the complexity and cost while achieving a sufficient sum-rate. Previous works on hybrid precoding were usually…

信号处理 · 电气工程与系统科学 2020-04-28 Ahmet M. Elbir , Anastasios Papazafeiropoulos

Deep learning has revolutionized biomedical research by providing sophisticated methods to handle complex, high-dimensional data. Multimodal deep learning (MDL) further enhances this capability by integrating diverse data types such as…

Contrastive learning methods in self-supervised settings have primarily focused on pre-training encoders, while decoders are typically introduced and trained separately for downstream dense prediction tasks. However, this conventional…

计算机视觉与模式识别 · 计算机科学 2026-03-05 Sébastien Quetin , Tapotosh Ghosh , Farhad Maleki

Publicly available collections of drug-like molecules have grown to comprise 10s of billions of possibilities in recent history due to advances in chemical synthesis. Traditional methods for identifying "hit" molecules from a large…

In this research. we analyze the potential of Feature Density (HD) as a way to comparatively estimate machine learning (ML) classifier performance prior to training. The goal of the study is to aid in solving the problem of…

计算与语言 · 计算机科学 2022-06-07 Juuso Eronen , Michal Ptaszynski , Fumito Masui , Gniewosz Leliwa , Michal Wroczynski

Drug-drug interactions (DDIs) are a major cause of preventable hospitalizations and deaths. Predicting the occurrence of DDIs helps drug safety professionals allocate investigative resources and take appropriate regulatory action promptly.…

机器学习 · 计算机科学 2018-11-02 Xu Chu , Yang Lin , Jingyue Gao , Jiangtao Wang , Yasha Wang , Leye Wang

Low dose computed tomography (LDCT) is desirable for both diagnostic imaging and image guided interventions. Denoisers are openly used to improve the quality of LDCT. Deep learning (DL)-based denoisers have shown state-of-the-art…

图像与视频处理 · 电气工程与系统科学 2020-12-08 Ti Bai , Biling Wang , Dan Nguyen , Bao Wang , Bin Dong , Wenxiang Cong , Mannudeep K. Kalra , Steve Jiang

Kernel fusion is a popular and effective approach for combining multiple features that characterize different aspects of data. Traditional approaches for Multiple Kernel Learning (MKL) attempt to learn the parameters for combining the…

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