相关论文: PySymmPol: Symmetric Polynomials in Python
Protein Fragment Motif Finder (PFMFind) is a system that enables efficient discovery of relationships between short fragments of protein sequences using similarity search. It supports queries based on score matrices and PSSMs obtained…
The package \textsf{clayton} is designed to be intuitive, user-friendly, and efficient. It offers a wide range of copula models, including Archimedean, Elliptical, and Extreme. The package is implemented in pure \textsf{Python}, making it…
We present an open source Python 3 library aimed at practitioners of molecular simulation, especially Monte Carlo simulation. The aims of the library are to facilitate the generation of simulation data for a wide range of problems; and to…
PySINDy is a Python package for the discovery of governing dynamical systems models from data. In particular, PySINDy provides tools for applying the sparse identification of nonlinear dynamics (SINDy) (Brunton et al. 2016) approach to…
Bayesian Networks (BNs) are used in various fields for modeling, prediction, and decision making. pgmpy is a python package that provides a collection of algorithms and tools to work with BNs and related models. It implements algorithms for…
pyGDM is a python toolkit for electro-dynamical simulations in nano-optics based on the Green Dyadic Method (GDM). In contrast to most other coupled-dipole codes, pyGDM uses a generalized propagator, which allows to cost-efficiently solve…
Python implementation of permutations is presented. Three classes are introduced: Perm for permutations, Group for permutation groups, and PermError to report any errors for both classes. The class Perm is based on Python dictionaries and…
PySCF is a general-purpose electronic structure platform designed from the ground up to emphasize code simplicity, both to aid new method development, as well as for flexibility in computational workflow. The package provides a wide range…
We describe an algorithm, implemented in Python, which can enumerate any permutation class with polynomial enumeration from a structural description of the class. In particular, this allows us to find formulas for the number of permutations…
In this paper, we introduce Pysimfrac, a open-source python library for generating 3-D synthetic fracture realizations, integrating with fluid simulators, and performing analysis. Pysimfrac allows the user to specify one of three fracture…
Polynomials with values in an irreducible module of the symmetric group can be given the structure of a module for the rational Cherednik algebra, called a standard module. This algebra has one free parameter and is generated by…
The {\tt Macaulay2} package {\tt RandomMonomialIdeals} provides users with a set of tools that allow for the systematic generation and study of random monomial ideals. It also introduces new objects, Sample and Model, to allow for…
The direct detection and characterization of planetary and substellar companions at small angular separations is a rapidly advancing field. Dedicated high-contrast imaging instruments deliver unprecedented sensitivity, enabling detailed…
In recent years, numerical simulations have become indispensable for addressing complex astrophysical problems. The MagnetoHydroDynamics (MHD) framework represents a key tool for investigating the dynamical evolution of astrophysical…
It is shown how the Python library Sympy can be used to compute symbolically the coefficients of the power series solution of the Lane-Emden equation (LEE). Sympy is an open source Python library for symbolic mathematics. The power series…
An ideal of polynomials is symmetric if it is closed under permutations of variables. We relate general symmetric ideals to the so called Specht ideals generated by all Specht polynomials of a given shape. We show a connection between the…
The paper deals with two fundamental types of trigonometric polynomials and splines on uniform grids, which allow us to construct interpolation approximations that depend linearly on the values of the interpolated function. Fundamental on…
SWIFTGalaxy is an open-source astrophysics module that extends SWIFTSimIO to analyses of particles belonging to individual galaxies simulated with SWIFT. It inherits from and extends the functionality of SWIFTSimIO's SWIFTDataset class. It…
There is a need for open-source libraries in emission tomography that (i) use modern and popular backend code to encourage community contributions and (ii) offer support for the multitude of reconstruction techniques available in recent…
Grid diagrams are a combinatorial version of classical link diagrams, widely used in theoretical, computational and applied knot theory. Motivated by questions from (bio)-physical knot theory, we introduce GridPyM, a Sage compatible Python…