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During embryonic development, structures with complex geometry can emerge from planar epithelial monolayers and to study these shape transitions is of key importance for revealing the biophysical laws involved in the morphogenesis of…

软凝聚态物质 · 物理学 2023-08-29 Daria S. Roshal , Karim Azzag , Kirill K. Fedorenko , Sergei B. Rochal , Stephen Baghdiguian

Different cell types aggregate and sort into hierarchical architectures during the formation of animal tissues. The resulting spatial organization depends (in part) on the strength of adhesion of one cell type to itself relative to other…

定量方法 · 定量生物学 2023-08-02 Dhananjay Bhaskar , William Y. Zhang , Alexandria Volkening , Björn Sandstede , Ian Y. Wong

We introduce a general, efficient method to completely describe the topology of individual grains, bubbles, and cells in three-dimensional polycrystals, foams, and other multicellular microstructures. This approach is applied to a pair of…

材料科学 · 物理学 2017-11-10 Emanuel A. Lazar , Jeremy K. Mason , Robert D. MacPherson , David J. Srolovitz

The Voronoi-based cellular model is highly successful in describing the motion of two-dimensional confluent cell tissues. In the homogeneous version of this model, the energy of each cell is determined solely by its geometric shape and…

细胞行为 · 定量生物学 2018-11-07 Eial Teomy , David A. Kessler , Herbert Levine

Voronoi tessellations have been used to model the geometric arrangement of cells in morphogenetic or cancerous tissues, however so far only with flat hypersurfaces as cell-cell contact borders. In order to reproduce the experimentally…

生物物理 · 物理学 2009-12-02 Martin Bock , Amit Kumar Tyagi , Jan-Ulrich Kreft , Wolfgang Alt

Voronoi diagrams appear in many areas in science and technology and have numerous applications. They have been the subject of extensive investigation during the last decades. Roughly speaking, they are a certain decomposition of a given…

计算几何 · 计算机科学 2015-03-19 Daniel Reem

Accurately modeling multi-class cell topology is crucial in digital pathology, as it provides critical insights into tissue structure and pathology. The synthetic generation of cell topology enables realistic simulations of complex tissue…

图像与视频处理 · 电气工程与系统科学 2025-03-26 Meilong Xu , Saumya Gupta , Xiaoling Hu , Chen Li , Shahira Abousamra , Dimitris Samaras , Prateek Prasanna , Chao Chen

Many cell types spontaneously order like nematic liquid crystals, and, as such, they form topological defects. While defects with topological charge $\pm$1/2 are common in cell monolayers, the defects with charge $\pm$1, relevant in the…

软凝聚态物质 · 物理学 2019-12-09 Kirsten D. Endresen , MinSu Kim , Francesca Serra

There is now growing evidence of the emergence and biological functionality of liquid crystal features, including nematic order and topological defects, in cellular tissues. However, how such features that intrinsically rely on particle…

软凝聚态物质 · 物理学 2019-02-06 Romain Mueller , Julia Yeomans , Amin Doostmohammadi

Control of cell proliferation is a fundamental aspect of tissue physiology central to morphogenesis, wound healing and cancer. Although many of the molecular genetic factors are now known, the system level regulation of growth is still…

Cellular structures manifest their outstanding mechanical properties in many biological systems. One key challenge for designing and optimizing these geometrically complicated structures lies in devising an effective geometric…

The vertex model is a popular framework for modelling tightly packed biological cells, such as confluent epithelia. Cells are described by convex polygons tiling the plane and their equilibrium is found by minimizing a global mechanical…

生物物理 · 物理学 2021-03-17 Oliver E. Jensen , Emma Johns , Sarah Woolner

Network densification and heterogenisation through the deployment of small cellular access points (picocells and femtocells) are seen as key mechanisms in handling the exponential increase in cellular data traffic. Modelling such networks…

网络与互联网体系结构 · 计算机科学 2017-05-11 Pete Pratt , Carl P. Dettmann , Orestis Georgiou

Cooperation is prevalent in nature, not only in the context of social interactions within the animal kingdom, but also on the cellular level. In cancer for example, tumour cells can cooperate by producing growth factors. The evolution of…

种群与进化 · 定量生物学 2018-12-07 Jessie Renton , Karen M. Page

Cells forming various epithelial tissues have a strikingly universal distribution for the number of their edges. It is generally assumed that this topological feature is predefined by the statistics of individual cell divisions in growing…

Voronoi Tessellations form an attractive and versatile geometrical asymptotic model for the foamlike cosmic distribution of matter and galaxies. In the Voronoi model the vertices are identified with clusters of galaxies. For a substantial…

天体物理学 · 物理学 2007-05-23 Rien van de Weygaert

Interacting, self-propelled particles such as epithelial cells can dynamically self-organize into complex multicellular patterns, which are challenging to classify without a priori information. Classically, different phases and phase…

定量方法 · 定量生物学 2021-01-19 Dhananjay Bhaskar , William Y. Zhang , Ian Y. Wong

Epithelia are confluent cell layers that self-organize into polygonal networks whose geometry encodes their mechanical state. A principal driver is the tunable contractility of the actomyosin cortex, which links cell-junction tension to…

软凝聚态物质 · 物理学 2025-12-16 Sulaimaan Lim , Julien Vermot , Chiu Fan Lee

Although random cell complexes occur throughout the physical sciences, there does not appear to be a standard way to quantify their statistical similarities and differences. The various proposals in the literature are usually motivated by…

计算几何 · 计算机科学 2016-06-15 Benjamin Schweinhart , Jeremy Mason , Robert MacPherson

Navigating topological transitions in cellular mechanical systems is a significant challenge for existing simulation methods. While abstract models lack predictive capabilities at the cellular level, explicit network representations…

图形学 · 计算机科学 2024-04-30 Logan Numerow , Yue Li , Stelian Coros , Bernhard Thomaszewski
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