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Biomedical datasets are often constrained by stringent privacy requirements and frequently suffer from severe class imbalance. These two aspects hinder the development of accurate machine learning models. While generative AI offers a…

计算机视觉与模式识别 · 计算机科学 2025-09-03 Jan Carreras Boada , Rao Muhammad Umer , Carsten Marr

Cell heterogeneity and the inherent complexity due to the interplay of multiple molecular processes within the cell pose difficult challenges for current single-cell biology. We introduce an approach that identifies a disease phenotype from…

Single-cell multi-omics data contain huge information of cellular states, and analyzing these data can reveal valuable insights into cellular heterogeneity, diseases, and biological processes. However, as cell differentiation \& development…

基因组学 · 定量生物学 2025-08-27 Wuchao Liu , Han Peng , Wengen Li , Yichao Zhang , Jihong Guan , Shuigeng Zhou

Graph Neural Networks (GNNs) have shown state-of-the-art improvements in node classification tasks on graphs. While these improvements have been largely demonstrated in a multi-class classification scenario, a more general and realistic…

机器学习 · 计算机科学 2024-03-01 Tianqi Zhao , Ngan Thi Dong , Alan Hanjalic , Megha Khosla

Recognizing the types of white blood cells (WBCs) in microscopic images of human blood smears is a fundamental task in the fields of pathology and hematology. Although previous studies have made significant contributions to the development…

图像与视频处理 · 电气工程与系统科学 2023-05-22 Satoshi Tsutsui , Zhengyang Su , Bihan Wen

The shape of erythrocytes or red blood cells is altered in several pathological conditions. Therefore, identifying and quantifying different erythrocyte shapes can help diagnose various diseases and assist in designing a treatment strategy.…

Benchmark datasets for network intrusion detection commonly rely on synthetically generated traffic, which fails to reflect the statistical variability and temporal drift encountered in operational environments. This paper introduces…

机器学习 · 计算机科学 2025-06-23 Joshua Schraven , Alexander Windmann , Oliver Niggemann

The increasing complexity of AI workloads, especially distributed Large Language Model (LLM) training, places significant strain on the networking infrastructure of parallel data centers and supercomputing systems. While Equal-Cost Multi-…

网络与互联网体系结构 · 计算机科学 2024-10-25 Hasibul Jamil , Abdul Alim , Laurent Schares , Pavlos Maniotis , Liran Schour , Ali Sydney , Abdullah Kayi , Tevfik Kosar , Bengi Karacali

Histopathology remains the gold standard for diagnosis of various cancers. Recent advances in computer vision, specifically deep learning, have facilitated the analysis of histopathology images for various tasks, including immune cell…

定量方法 · 定量生物学 2023-11-02 Jakub R. Kaczmarzyk , Tahsin M. Kurc , Shahira Abousamra , Rajarsi Gupta , Joel H. Saltz , Peter K. Koo

This paper presents a comprehensive methodology and comparative performance analysis for the automated classification and object detection of peripheral blood cells (PBCs) in microscopic images. Addressing the critical challenge of data…

计算机视觉与模式识别 · 计算机科学 2025-11-12 Siddharth Sahay

Acute lymphoblastic leukemia (ALL) is a prevalent hematological malignancy in both pediatric and adult populations. Early and accurate detection with precise subtyping is essential for guiding therapy. Conventional workflows are complex,…

计算机视觉与模式识别 · 计算机科学 2025-08-26 Md. Maruf , Md. Mahbubul Haque , Bishowjit Paul

The emergence of pathology foundation models has revolutionized computational histopathology, enabling highly accurate, generalized whole-slide image analysis for improved cancer diagnosis, and prognosis assessment. While these models show…

Powerful generative AI models of protein-ligand structure have recently been proposed, but few of these methods support both flexible protein-ligand docking and affinity estimation. Of those that do, none can directly model multiple binding…

机器学习 · 计算机科学 2025-03-25 Alex Morehead , Jianlin Cheng

Accurate morphological classification of white blood cells (WBCs) is an important step in the diagnosis of leukemia, a disease in which nonfunctional blast cells accumulate in the bone marrow. Recently, deep convolutional neural networks…

计算机视觉与模式识别 · 计算机科学 2023-04-19 Rao Muhammad Umer , Armin Gruber , Sayedali Shetab Boushehri , Christian Metak , Carsten Marr

In multiphase flow systems, classifying flow patterns is crucial to optimize fluid dynamics and enhance system efficiency. Current industrial methods and scientific laboratories mainly depend on techniques such as flow visualization using…

机器学习 · 计算机科学 2025-02-27 Nian Ran , Fayez M. Al-Alweet , Richard Allmendinger , Ahmad Almakhlafi

Acute lymphoblastic leukemia (ALL) severity is determined by the presence and ratios of blast cells (abnormal white blood cells) in both bone marrow and peripheral blood. Manual diagnosis of this disease is a tedious and time-consuming…

计算机视觉与模式识别 · 计算机科学 2024-08-13 Amir Masoud Rahmani , Parisa Khoshvaght , Hamid Alinejad-Rokny , Samira Sadeghi , Parvaneh Asghari , Zohre Arabi , Mehdi Hosseinzadeh

Accurate intraoperative assessment of glioma infiltration is essential for maximizing tumor resection while preserving functional brain tissue. Fluorescence lifetime imaging (FLIm) offers real-time, label-free biochemical contrast, but its…

计算机视觉与模式识别 · 计算机科学 2026-04-30 Silvia Noble Anbunesan , Mohamed Abul Hassan , Jinyi Qi , Lisanne Kraft , Han Sung Lee , Orin Bloch , Laura Marcu

In immunology studies, flow cytometry is a commonly used multivariate single-cell assay. One key goal in flow cytometry analysis is to pinpoint the immune cells responsive to certain stimuli. Statistically, this problem can be translated…

统计方法学 · 统计学 2021-03-29 John Pura , Xuechan Li , Cliburn Chan , Jichun Xie

Cell detection, segmentation and classification are essential for analyzing tumor microenvironments (TME) on hematoxylin and eosin (H&E) slides. Existing methods suffer from poor performance on understudied cell types (rare or not present…

Hereditary hemolytic anemias are genetic disorders that affect the shape and density of red blood cells. Genetic tests currently used to diagnose such anemias are expensive and unavailable in the majority of clinical labs. Here, we propose…

计算机视觉与模式识别 · 计算机科学 2021-03-18 Ario Sadafi , Lucía María Moya Sans , Asya Makhro , Leonid Livshits , Nassir Navab , Anna Bogdanova , Shadi Albarqouni , Carsten Marr