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The discovery of novel inhibitor molecules for emerging drug-target proteins is widely acknowledged as a challenging inverse design problem: Exhaustive exploration of the vast chemical search space is impractical, especially when the target…

Drug development is an expensive and time-consuming process where thousands of chemical compounds are being tested in order to find those possessing drug-like properties while being safe and effective. One of key parts of the early drug…

定量方法 · 定量生物学 2022-02-15 Josip Mesarić

Self-supervised pre-training is gaining increasingly more popularity in AI-aided drug discovery, leading to more and more pre-trained models with the promise that they can extract better feature representations for molecules. Yet, the…

生物大分子 · 定量生物学 2022-09-16 Ziqiao Zhang , Yatao Bian , Ailin Xie , Pengju Han , Long-Kai Huang , Shuigeng Zhou

Cancer drug response prediction (DRP) models present a promising approach towards precision oncology, tailoring treatments to individual patient profiles. While deep learning (DL) methods have shown great potential in this area, models that…

Lipid nanoparticles (LNPs) are highly effective carriers for gene therapies, including mRNA and siRNA delivery, due to their ability to transport nucleic acids across biological membranes, low cytotoxicity, improved pharmacokinetics, and…

生物大分子 · 定量生物学 2025-06-06 Gaurav Kumar , Arezoo M. Ardekani

RNAs play crucial and versatile roles in biological processes. Computational prediction approaches can help to understand RNA structures and their stabilizing factors, thus providing information on their functions, and facilitating the…

生物物理 · 物理学 2020-09-04 Bin Huang , Yuanyang Du , Shuai Zhang , Wenfei Li , Jun Wang , Jian Zhang

The COVID-19 pandemic, caused by SARS-CoV-2, highlighted the critical need for accurate prediction of disease severity to optimize healthcare resource allocation and patient management. The spike protein, which facilitates viral entry into…

机器学习 · 计算机科学 2025-06-02 Caio Cheohen , Vinnícius M. S. Gomes , Manuela L. da Silva

Recent Artificial Intelligence (AI) models have matched or exceeded human experts in several benchmarks of biomedical task performance, but surgical benchmarks in particular are often missing from prominent medical benchmark suites. Since…

RNA is a vital biomolecule with numerous roles and functions within cells, and interest in targeting it for therapeutic purposes has grown significantly in recent years. However, fully understanding and predicting RNA behavior, particularly…

Drug resistance is a major threat to the global health and a significant concern throughout the clinical treatment of diseases and drug development. The mutation in proteins that is related to drug binding is a common cause for adaptive…

定量方法 · 定量生物学 2022-05-18 Ziyi Yang , Zhaofeng Ye , Yijia Xiao , Changyu Hsieh , Shengyu Zhang

Drug discovery seeks molecules (ligands) that bind strongly and selectively to a target protein. However, fewer than 5% of candidate ligands pass the bar for even the early stages of drug discovery. Furthermore, we want methods that work…

机器学习 · 计算机科学 2026-05-08 Rahul Nandakumar , Ben Fauber , Deepayan Chakrabarti

Messenger RNA (mRNA) sequences as therapeutics require optimized design to ensure efficient translation, structural stability, and minimal immunogenicity. This study presents a two-stage in-silico framework that integrates deep learning and…

计算与语言 · 计算机科学 2026-05-28 Dhawa Sang Dong , Mausam Gurung , Suraj Kandel

Identification and verification of molecular properties such as side effects is one of the most important and time-consuming steps in the process of molecule synthesis. For example, failure to identify side effects before submission to…

定量方法 · 定量生物学 2024-04-12 Collin Beaudoin , Koustubh Phalak , Swaroop Ghosh

A combination of traditional image processing methods with advanced neural networks concretes a predictive and preventive healthcare paradigm. This study offers rapid, accurate, and non-invasive diagnostic solutions that can significantly…

Gene Regulatory Networks (GRNs) are intricate biological systems that control gene expression and regulation in response to environmental and developmental cues. Advances in computational biology, coupled with high throughput sequencing…

机器学习 · 计算机科学 2025-04-18 Akshata Hegde , Tom Nguyen , Jianlin Cheng

Recent advances in healthcare technologies have led to the availability of large amounts of biological samples across several techniques and applications. In particular, in the last few years, Raman spectroscopy analysis of biological…

定量方法 · 定量生物学 2025-06-24 Marco Piazza , Andrea Spinelli , Francesca Maggioni , Marzia Bedoni , Enza Messina

Drug discovery is adapting to novel technologies such as data science, informatics, and artificial intelligence (AI) to accelerate effective treatment development while reducing costs and animal experiments. AI is transforming drug…

人工智能 · 计算机科学 2023-07-14 Catrin Hasselgren , Tudor I. Oprea

miRNA and gene expression profiles have been proved useful for classifying cancer samples. Efficient classifiers have been recently sought and developed. A number of attempts to classify cancer samples using miRNA/gene expression profiles…

计算工程、金融与科学 · 计算机科学 2014-01-21 Rania Ibrahim , Noha A. Yousri , Mohamed A. Ismail , Nagwa M. El-Makky

Larger Spiking Neural Network (SNN) models are typically favorable as they can offer higher accuracy. However, employing such models on the resource- and energy-constrained embedded platforms is inefficient. Towards this, we present a…

神经与进化计算 · 计算机科学 2022-06-20 Rachmad Vidya Wicaksana Putra , Muhammad Shafique

Spiking Neural Networks (SNNs) can offer ultra-low power/energy consumption for machine learning-based application tasks due to their sparse spike-based operations. Currently, most of the SNN architectures need a significantly larger model…

神经与进化计算 · 计算机科学 2024-12-10 Rachmad Vidya Wicaksana Putra , Muhammad Shafique