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The coffea framework provides a new approach to High-Energy Physics analysis, via columnar operations, that improves time-to-insight, scalability, portability, and reproducibility of analysis. It is implemented with the Python programming…

分布式、并行与集群计算 · 计算机科学 2021-08-09 Nicholas Smith , Lindsey Gray , Matteo Cremonesi , Bo Jayatilaka , Oliver Gutsche , Allison Hall , Kevin Pedro , Maria Acosta , Andrew Melo , Stefano Belforte , Jim Pivarski

This article introduces MCNP-GO (https://github.com/afriou/mcnpgo), a Python package designed to manipulate and assemble MCNP input files, allowing users to assemble a set of independent objects, each described by a valid MCNP file, into a…

计算工程、金融与科学 · 计算机科学 2025-07-09 Alexandre Friou

An easy way to define and visualize geometry for PHITS input files introduced. Suggested FitsGeo Python package helps to define surfaces as Python objects and manipulate them conveniently. VPython assists to view defined geometry…

人机交互 · 计算机科学 2020-08-11 Ivan Gordeev

In this feature article, we provide an overview of our research on statistical copolymers as a coating material for metal oxide nanoparticles and surfaces. These copolymers contain functional groups enabling non-covalent binding to oxide…

软凝聚态物质 · 物理学 2022-04-29 Jean-Francois Berret , Alain Graillot

Cooper is an open-source package for solving constrained optimization problems involving deep learning models. Cooper implements several Lagrangian-based first-order update schemes, making it easy to combine constrained optimization…

机器学习 · 计算机科学 2025-04-03 Jose Gallego-Posada , Juan Ramirez , Meraj Hashemizadeh , Simon Lacoste-Julien

Materials science inherently spans disciplines: experimentalists use advanced microscopy to uncover micro- and nanoscale structure, while theorists and computational scientists develop models that link processing, structure, and properties.…

机器学习 · 计算机科学 2026-03-25 Simon Daubner , Alexander E. Cohen , Benjamin Dörich , Samuel J. Cooper

Open-source scientific software is a major driver of scientific progress, yet its development and reuse remain difficult in collaborative settings. Researchers repeatedly face four recurring challenges: discovering and reproducing existing…

数字图书馆 · 计算机科学 2026-04-22 Jan Philipp Albrecht , Deborah Schmidt , Lucas Rieckert , Maximilian Otto , Kyle Harrington

Metal-organic frameworks (MOFs) are a class of crystalline materials with promising applications in many areas such as carbon capture and drug delivery. In this work, we introduce MOFFlow, the first deep generative model tailored for MOF…

生物大分子 · 定量生物学 2025-03-20 Nayoung Kim , Seongsu Kim , Minsu Kim , Jinkyoo Park , Sungsoo Ahn

PyMembrane is a software package for simulating liquid and elastic membranes using a discretisation of the continuum description based on unstructured triangulated two-dimensional meshes embedded in three-dimensional space. The package is…

软凝聚态物质 · 物理学 2023-08-25 D. A. Matoz-Fernandez , Siyu Li , Monica Olvera de la Cruz , Rastko Sknepnek

In this paper, we present pomdp_py, a general purpose Partially Observable Markov Decision Process (POMDP) library written in Python and Cython. Existing POMDP libraries often hinder accessibility and efficient prototyping due to the…

人工智能 · 计算机科学 2020-04-22 Kaiyu Zheng , Stefanie Tellex

Deep learning-based molecular generation models have shown great potential in efficiently exploring vast chemical spaces by generating potential drug candidates with desired properties. However, these models often produce chemically invalid…

机器学习 · 计算机科学 2025-11-19 Jun-Hyoung Park , Ho-Jun Song , Seong-Whan Lee

While state-of-the-art image generation models achieve remarkable visual quality, their internal generative processes remain a "black box." This opacity limits human observation and intervention, and poses a barrier to ensuring model…

计算机视觉与模式识别 · 计算机科学 2025-12-10 Young Kyung Kim , Oded Schlesinger , Yuzhou Zhao , J. Matias Di Martino , Guillermo Sapiro

In this work, we present scikit-fingerprints, a Python package for computation of molecular fingerprints for applications in chemoinformatics. Our library offers an industry-standard scikit-learn interface, allowing intuitive usage and easy…

软件工程 · 计算机科学 2025-08-12 Jakub Adamczyk , Piotr Ludynia

ORBKIT is a toolbox for post-processing electronic structure calculations based on a highly modular and portable Python architecture. The program allows computing a multitude of electronic properties of molecular systems on arbitrary…

High-order numerical methods for unstructured grids combine the superior accuracy of high-order spectral or finite difference methods with the geometric flexibility of low-order finite volume or finite element schemes. The Flux…

计算物理 · 物理学 2015-06-18 Freddie D Witherden , Antony M Farrington , Peter E Vincent

TorchOptics is an open-source Python library for differentiable Fourier optics simulations, developed using PyTorch to enable GPU-accelerated tensor computations and automatic differentiation. It provides a comprehensive framework for…

光学 · 物理学 2024-11-28 Matthew J. Filipovich , A. I. Lvovsky

Co-occurrence Filter (CoF) is a boundary preserving filter. It is based on the Bilateral Filter (BF) but instead of using a Gaussian on the range values to preserve edges it relies on a co-occurrence matrix. Pixel values that co-occur…

计算机视觉与模式识别 · 计算机科学 2017-12-27 Roy J Jevnisek , Shai Avidan

This work presents Kornia -- an open source computer vision library which consists of a set of differentiable routines and modules to solve generic computer vision problems. The package uses PyTorch as its main backend both for efficiency…

计算机视觉与模式识别 · 计算机科学 2019-10-10 Edgar Riba , Dmytro Mishkin , Daniel Ponsa , Ethan Rublee , Gary Bradski

Computed tomography (CT) is routinely used in clinical practice to evaluate a wide variety of medical conditions. While CT scans provide diagnoses, they also offer the ability to extract quantitative body composition metrics to analyze…

This paper introduces PyGAD, an open-source easy-to-use Python library for building the genetic algorithm. PyGAD supports a wide range of parameters to give the user control over everything in its life cycle. This includes, but is not…

神经与进化计算 · 计算机科学 2021-06-14 Ahmed Fawzy Gad