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The manipulation of the quantum states of light in linear optical systems has multiple applications in quantum optics and quantum computation. The package QOptCraft gives a collection of methods to solve some of the most usual problems when…

Automatic differentiation represents a paradigm shift in scientific programming, where evaluating both functions and their derivatives is required for most applications. By removing the need to explicitly derive expressions for gradients,…

化学物理 · 物理学 2022-06-29 Muhammad F. Kasim , Susi Lehtola , Sam M. Vinko

The article summarizes the study performed in the context of the Deloitte Quantum Climate Challenge in 2023. We present a hybrid quantum-classical method for calculating Potential Energy Surface scans, which are essential for designing…

量子物理 · 物理学 2023-09-12 Kourosh Sayar Dogahe , Tamara Sarac , Delphine De Smedt , Koen Bertels

With advancements in computational molecular modeling and powerful structure search methods, it is now possible to systematically screen crystal structures for small organic molecules. In this context, we introduce the Python package…

材料科学 · 物理学 2025-06-06 Qiang Zhu , Shinnosuke Hattori

Metal-Organic Frameworks (MOFs) are materials with a high degree of porosity that can be used for applications in energy storage, water desalination, gas storage, and gas separation. However, the chemical space of MOFs is close to an…

机器学习 · 计算机科学 2022-10-26 Zhonglin Cao , Rishikesh Magar , Yuyang Wang , Amir Barati Farimani

Probabilistic super-resolution of high-dimensional spatial fields using diffusion models is often computationally prohibitive due to the cost of operating directly in pixel space. We propose PODiff, a structured conditional generative…

机器学习 · 计算机科学 2026-05-06 Onkar Jadhav , Tim French , Matthew Rayson , Nicole L. Jones

We introduce Repro, an open-source library which aims at improving the reproducibility and usability of research code. The library provides a lightweight Python API for running software released by researchers within Docker containers which…

计算与语言 · 计算机科学 2022-05-02 Daniel Deutsch , Dan Roth

Target-specific peptides, such as conotoxins, exhibit exceptional binding affinity and selectivity toward ion channels and receptors. However, their therapeutic potential remains underutilized due to the limited diversity of natural…

生物大分子 · 定量生物学 2025-05-07 Cheng Ge , Han-Shen Tae , Zhenqiang Zhang , Lu Lu , Zhijie Huang , Yilin Wang , Tao Jiang , Wenqing Cai , Shan Chang , David J. Adams , Rilei Yu

This paper reports the development of a Python Non-Uniform Fast Fourier Transform (PyNUFFT) package, which accelerates non-Cartesian image reconstruction on heterogeneous platforms. Scientific computing with Python encompasses a mature and…

医学物理 · 物理学 2017-10-10 Jyh-Miin Lin

As wide-field surveys yield ever more precise measurements, cosmology has entered a phase of high precision requiring highly accurate and fast theoretical predictions. At the heart of most cosmological model predictions is a numerical…

宇宙学与河外天体物理 · 物理学 2017-08-18 Alexandre Refregier , Lukas Gamper , Adam Amara , Lavinia Heisenberg

We propose a systematic method to construct crystal-based molecular structures often needed as input for computational chemistry studies. These structures include crystal ``slabs" with periodic boundary conditions (PBCs) and non-periodic…

Covalent organic frameworks (COFs) are a promising material for various applications such as gas storage/separation, catalysis, and energy storage, besides offering a confined space for chemical reaction. The introduction of unconventional…

DisCoPy (Distributional Compositional Python) is an open source toolbox for computing with string diagrams and functors. In particular, the diagram data structure allows to encode various kinds of quantum processes, with functors for…

量子物理 · 物理学 2022-05-12 Alexis Toumi , Giovanni de Felice , Richie Yeung

This work introduces pyramidal convolution (PyConv), which is capable of processing the input at multiple filter scales. PyConv contains a pyramid of kernels, where each level involves different types of filters with varying size and depth,…

计算机视觉与模式识别 · 计算机科学 2020-06-23 Ionut Cosmin Duta , Li Liu , Fan Zhu , Ling Shao

Superconducting quantum circuits are a promising hardware platform for realizing a fault-tolerant quantum computer. Accelerating progress in this field of research demands general approaches and computational tools to analyze and design…

We introduce the Piquasso quantum programming framework, a full-stack open-source software platform for the simulation and programming of photonic quantum computers. Piquasso can be programmed via a high-level Python programming interface…

This paper introduces ROmodel, an open source Python package extending the modeling capabilities of the algebraic modeling language Pyomo to robust optimization problems. ROmodel helps practitioners transition from deterministic to robust…

最优化与控制 · 数学 2021-05-19 Johannes Wiebe , Ruth Misener

We introduce DeePKS-kit, an open-source software package for developing machine learning based energy and density functional models. DeePKS-kit is interfaced with PyTorch, an open-source machine learning library, and PySCF, an ab initio…

化学物理 · 物理学 2021-06-23 Yixiao Chen , Linfeng Zhang , Han Wang , Weinan E

We present the graph-based molecule software Molassembler for building organic and inorganic molecules. Molassembler provides algorithms for the construction of molecules built from any set of elements from the periodic table. In…

化学物理 · 物理学 2022-05-12 Jan-Grimo Sobez , Markus Reiher

In recent years, a lot of technological advances in computer science have aided software programmers to create innovative and real-time user-friendly software. With the creation of the software and the urging interest of people to learn to…

软件工程 · 计算机科学 2025-03-25 Kuldeep Gautam , S. VenkataKeerthy , Ramakrishna Upadrasta